Reconstruct ancestral state sequences of fungal repeat families by correcting for RIP-like mutations. Mask RIP or deamination events from alignments.
active 2023-10-20 → 2026-08-01 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1017 days from 2023-10-20 to 2026-08-01. Pushes: 95 total, peak 16 in a day. Pull requests: 19 total, peak 8 in a day. Issues: 20 total, peak 7 in a day. Comments: 7 total, peak 1 in a day. Stars: 0 total, peak 0 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| Adamtaranto | 131 | 88 | 18 | 6 |
| github-actions[bot] | 7 | 7 | 0 | 0 |
| dependabot[bot] | 1 | 0 | 1 | 0 |
| codecov[bot] | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Pull request#30dependabot[bot]2026-05-01 16:12
- Pull request#26Adamtaranto2025-11-09 21:58
- Issue#25Adamtaranto2025-07-20 04:31Generate RIP tolerant HMM from alignment
- Pull request#24Adamtaranto2025-06-07 10:18
- Issue comment#24Adamtaranto2025-05-15 01:20multithreading_trial
- Issue comment#24Adamtaranto2025-05-14 06:00multithreading_trial
- Pull request#24Adamtaranto2025-05-14 05:57
- Issue comment#21Adamtaranto2025-04-22 11:39Shiny-live web app
- ReleaseAdamtaranto2025-04-04 02:29v0.4.0
- Pull request#22Adamtaranto2025-04-04 02:17
- Issue comment#22codecov[bot]2025-04-04 00:44Add mkdocs
- Pull request#22Adamtaranto2025-04-04 00:42
- ReleaseAdamtaranto2025-03-21 07:36v0.3.0
- Issue comment#16Adamtaranto2025-03-20 11:29Add graphics
- Issue#11Adamtaranto2025-03-19 12:26Push package to Pypi on release
- Issue#20Adamtaranto2025-03-19 12:25Add DeRIP Class
- ReleaseAdamtaranto2025-03-17 13:34v0.1.0
- Issue#9Adamtaranto2025-03-16 06:12Improve readability
- Issue#8Adamtaranto2025-03-16 06:11Add tests
- Pull request#18Adamtaranto2025-03-15 10:16
- Issue comment#16Adamtaranto2025-03-14 04:22Add graphics
- Issue#20Adamtaranto2025-03-14 04:02Add DeRIP Class
- Issue#19Adamtaranto2025-03-14 03:52Per column / row stats
- Pull request#18Adamtaranto2024-11-01 05:18
- Pull request#17Adamtaranto2024-10-28 05:07
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.