An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
active 2024-02-29 → 2025-03-29 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 395 days from 2024-02-29 to 2025-03-29. Pushes: 0 total, peak 0 in a day. Pull requests: 2 total, peak 2 in a day. Issues: 2 total, peak 1 in a day. Comments: 2 total, peak 2 in a day. Stars: 3 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| mdbarnesUCSD | 5 | 0 | 2 | 1 |
| jrcodina | 1 | 0 | 0 | 1 |
| marcos-diazg | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#18jrcodina2025-01-09 20:35GPU implementation
- Issue comment#18mdbarnesUCSD2025-01-09 20:05GPU implementation
- Issue#18mdbarnesUCSD2025-01-09 20:05GPU implementation
- Issue#16mdbarnesUCSD2024-07-10 20:00cosmic v2
- Pull request#17mdbarnesUCSD2024-07-10 00:04
- Pull request#15mdbarnesUCSD2024-07-10 00:03
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 3 stars here means stars gained during the window, not the repo's star count.