Repository for EMT image analysis code
active 2024-08-16 → 2026-01-22 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 525 days from 2024-08-16 to 2026-01-22. Pushes: 66 total, peak 13 in a day. Pull requests: 24 total, peak 6 in a day. Issues: 11 total, peak 3 in a day. Comments: 58 total, peak 8 in a day. Stars: 0 total, peak 0 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| smishra3 | 81 | 41 | 9 | 16 |
| pgarrison | 65 | 9 | 7 | 22 |
| mfs4rd | 17 | 5 | 6 | 6 |
| kiryteo | 15 | 0 | 2 | 7 |
| saeliddp | 12 | 11 | 0 | 0 |
| vianamp | 8 | 0 | 0 | 5 |
| Copilot | 4 | 0 | 0 | 1 |
| jessicasyu | 2 | 0 | 0 | 0 |
| derekthirstrup | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#32smishra32025-11-18 23:13Bio ome-zarr plug installation required
- Issue#26smishra32025-11-17 17:57Installation instruction `source venv/bin/activate` is not Windows compatible
- Issue#33smishra32025-11-13 17:34Error when running ACM for CZI
- Issue#27smishra32025-11-13 17:31Colony mask training/inference instructions
- Issue comment#27smishra32025-11-13 17:30Colony mask training/inference instructions
- Issue comment#53smishra32025-11-13 17:28bioio-ome-zarr not installed by default
- Issue comment#52smishra32025-11-13 17:18remove mlflow logger
- Issue comment#51smishra32025-11-13 17:12Ckpt path download via curl details
- Pull request#54smishra32025-11-13 17:04
- Issue#53smishra32025-11-12 17:45bioio-ome-zarr not installed by default
- Issue#52smishra32025-11-12 17:39remove mlflow logger
- Issue#51smishra32025-11-12 17:33Ckpt path download via curl details
- Issue#28smishra32025-11-06 20:04Quilt links are not downloadable via curl
- Issue comment#48mfs4rd2025-09-29 19:43bioRxiv version path fix & obsolete ACM implementation replacement
- Issue comment#47kiryteo2025-09-23 00:05ACM inference and postprocessing files added
- Pull request#47kiryteo2025-09-23 00:05
- Pull request#50kiryteo2025-09-23 00:04
- Issue comment#47smishra32025-09-22 23:05ACM inference and postprocessing files added
- Pull request#48smishra32025-09-22 22:55
- Issue comment#33smishra32025-09-19 17:06Error when running ACM for CZI
- Pull request#46pgarrison2025-09-17 18:47
- Issue comment#35mfs4rd2025-09-11 21:44Basement Membrane segmentation readme clarrifications
- Pull request#35mfs4rd2025-09-11 21:44
- Pull request#45pgarrison2025-09-11 17:33
- Issue comment#36smishra32025-09-10 20:54acm inference files added
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.