Comprehensive suite for evaluating perturbation prediction models - (TEAM use only)
active 2025-06-19 → 2026-07-14 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 391 days from 2025-06-19 to 2026-07-14. Pushes: 56 total, peak 6 in a day. Pull requests: 28 total, peak 3 in a day. Issues: 34 total, peak 4 in a day. Comments: 42 total, peak 3 in a day. Stars: 59 total, peak 4 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| noamteyssier | 89 | 34 | 20 | 9 |
| gemini-code-assist[bot] | 26 | 0 | 0 | 18 |
| abhinadduri | 11 | 9 | 0 | 1 |
| LeonHafner | 8 | 3 | 2 | 2 |
| fctb12 | 7 | 6 | 1 | 0 |
| review-notebook-app[bot] | 4 | 0 | 0 | 4 |
| dhruvji | 4 | 4 | 0 | 0 |
| yhr91 | 3 | 0 | 0 | 1 |
| asalimih | 2 | 0 | 0 | 0 |
| jingshuw | 2 | 0 | 0 | 2 |
| r-sayar | 2 | 0 | 1 | 0 |
| horsepurve | 2 | 0 | 0 | 2 |
| KatarinaYuan | 2 | 0 | 0 | 2 |
| beabevi | 1 | 0 | 0 | 0 |
| qianachen | 1 | 0 | 0 | 0 |
| alexdobin | 1 | 0 | 0 | 1 |
| MingzeDong | 1 | 0 | 0 | 0 |
| mmdanziger | 1 | 0 | 0 | 0 |
| Rive-001 | 1 | 0 | 1 | 0 |
| zboldyga | 1 | 0 | 1 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#240LeonHafner2026-06-29 17:21
- Pull request#234LeonHafner2026-05-03 06:03
- Issue comment#232alexdobin2026-05-02 00:35Incorrect fold_change semantics in pdex >=0.2.0 break cell-eval metrics
- Issue comment#228gemini-code-assist[bot]2026-03-05 19:26Use left join for DE Spearman/AUC (Fixes #227)
- Issue#227beabevi2026-03-04 23:30DE metrics should use real‑DE genes / all genes (avoid inner‑join intersection)
- Pull request#226noamteyssier2026-02-26 22:47
- Pull request#225noamteyssier2026-02-26 19:44
- Pull request#224noamteyssier2026-02-26 19:37
- Issue#201noamteyssier2026-01-16 21:31AUROC systematically < 0.5 across models when using log-normalized input data
- Issue comment#217noamteyssier2026-01-16 21:30Question for FDR adjustment
- Issue comment#216noamteyssier2026-01-16 21:28Unable to specify negative control name in data preprocessing
- Issue comment#218gemini-code-assist[bot]2026-01-16 21:21216 unable to specify negative control name in data preprocessing
- Pull request#218noamteyssier2026-01-16 21:21
- Issue comment#215gemini-code-assist[bot]2026-01-15 23:54[draft][do not merge] Add top-k accuracy metric for inverse evaluation
- Pull request#214giovp2026-01-15 22:02
- Issue comment#213gemini-code-assist[bot]2025-12-25 18:07fixes an issue where spearman lfc calculation expects f64
- Issue comment#212gemini-code-assist[bot]2025-12-19 01:01Feat: Enable user defined FDR threshold
- Pull request#212Rive-0012025-12-19 01:01
- Issue comment#211gemini-code-assist[bot]2025-11-13 07:34Mitigate watermark warnings caused by oversized VCC files.
- Pull request#211bingooo2025-11-13 07:34
- Issue comment#201noamteyssier2025-11-11 20:07AUROC systematically < 0.5 across models when using log-normalized input data
- Issue#184noamteyssier2025-11-11 20:07Possible inconsistency in log1p detection between cell-eval and pdex leading to incorrect fold-change on VCC data
- Issue#208noamteyssier2025-11-11 20:04Important feature/bug in PR-AUC
- Releasenoamteyssier2025-11-11 20:04v0.6.6
- Issue comment#210gemini-code-assist[bot]2025-11-11 02:39Update _de.py
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 59 stars here means stars gained during the window, not the repo's star count.