Scripts for implementing the Tractor pipeline
active 2024-08-17 → 2026-07-29 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 712 days from 2024-08-17 to 2026-07-29. Pushes: 10 total, peak 5 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 11 total, peak 2 in a day. Comments: 10 total, peak 2 in a day. Stars: 2 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| nirav572 | 18 | 10 | 0 | 5 |
| ryshi06 | 3 | 0 | 0 | 1 |
| jtb324 | 3 | 0 | 0 | 0 |
| JasonTan-code | 3 | 0 | 0 | 2 |
| shahnirav1005 | 2 | 0 | 0 | 2 |
| tulsi92 | 1 | 0 | 0 | 0 |
| la-mendicino | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#54jtb3242026-01-28 15:39Error in anti-join when user provides a sampleIDcol that is not IID but there is also an IID column in the file
- Issue#52jtb3242026-01-21 18:35Issue: There is no warning or failure when the input VCF to extract_tracts.py is empty
- Issue#50jtb3242025-11-20 16:53Question about what happens if hapcount/dosage files contain people who are not in your phenotype file
- Issue#44nirav5722025-09-03 20:01Speed up extract_tracts.py step for large vcf
- Issue comment#49nirav5722025-09-03 19:57Run Tractor for 3 ancestry groups but the final output only has one ancestry p-value
- Issue comment#41nirav5722025-09-03 19:35Highly inflated p-value in Tractor GWAS
- Issue#41nirav5722025-09-03 19:35Highly inflated p-value in Tractor GWAS
- Issue comment#47JasonTan-code2025-08-29 21:27run_tractor.R only take file prefix as input value. It prevent running the job on the cloud in dsub mode
- Issue#47JasonTan-code2025-08-29 21:27run_tractor.R only take file prefix as input value. It prevent running the job on the cloud in dsub mode
- Issue#49ryshi062025-07-15 02:44Run Tractor for 3 ancestry groups but the final output only has one ancestry p-value
- Issue comment#42nirav5722025-01-10 02:45FLARE: Recovering Haplotypes Disrupted by Statistical Phasing
- Issue comment#43nirav5722025-01-10 02:39run_tractor.R: Option to output ancestry allele frequencies by group
- Issue comment#41JasonTan-code2025-01-03 21:06Highly inflated p-value in Tractor GWAS
- Issue comment#42shahnirav10052024-12-15 21:04FLARE: Recovering Haplotypes Disrupted by Statistical Phasing
- Issue comment#44shahnirav10052024-12-15 21:02Speed up extract_tracts.py step for large vcf
- Issue#44tulsi922024-12-11 20:37Speed up extract_tracts.py step for large vcf
- Issue comment#41ryshi062024-10-23 21:42Highly inflated p-value in Tractor GWAS
- Issue#36nirav5722024-10-23 21:29Question regarding VCFs and issue with the R script
- Issue comment#41nirav5722024-10-23 21:28Highly inflated p-value in Tractor GWAS
- Issue#41ryshi062024-10-19 02:42Highly inflated p-value in Tractor GWAS
- Issue#40la-mendicino2024-10-04 13:31Support for mixed models
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 2 stars here means stars gained during the window, not the repo's star count.