Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
active 2023-08-15 → 2026-08-10 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1092 days from 2023-08-15 to 2026-08-10. Pushes: 128 total, peak 22 in a day. Pull requests: 27 total, peak 4 in a day. Issues: 131 total, peak 4 in a day. Comments: 303 total, peak 10 in a day. Stars: 171 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| vitkl | 232 | 81 | 24 | 120 |
| pre-commit-ci[bot] | 49 | 47 | 2 | 0 |
| benoitsam | 10 | 0 | 0 | 10 |
| watermelontreesjs | 9 | 0 | 0 | 5 |
| ssobt | 9 | 0 | 0 | 4 |
| hkeremcil | 9 | 0 | 0 | 4 |
| Zhongzheng99 | 7 | 0 | 0 | 3 |
| GLking123 | 6 | 0 | 0 | 5 |
| lihaowhusos | 6 | 0 | 0 | 2 |
| kuang-da | 6 | 0 | 0 | 6 |
| Rafael-Silva-Oliveira | 6 | 0 | 0 | 4 |
| dyinboisry4u | 5 | 0 | 0 | 3 |
| Dillon214 | 5 | 0 | 0 | 2 |
| RolantusdataExp | 5 | 0 | 0 | 3 |
| Li-ZhiD | 4 | 0 | 0 | 3 |
| kimsjune | 4 | 0 | 0 | 4 |
| renyuan1988 | 4 | 0 | 0 | 2 |
| LiuJiamao521 | 4 | 0 | 0 | 2 |
| jil100 | 4 | 0 | 0 | 2 |
| No2Ross | 3 | 0 | 0 | 2 |
Recent activity
Latest issues, pull requests and releases
- Issue#443Heime-Jorgen2026-06-16 05:54K-Lean: machine-verified spatial transcriptomics contracts for cell2location
- Issue#439yuu3422026-05-11 09:24chunking large datasets
- Pull request#436vitkl2026-02-22 18:35
- Issue comment#425vitkl2026-02-22 16:22Fix #424, AttributeError: 'Series' object has no attribute 'nonzero'
- Pull request#434vitkl2026-02-22 16:21
- Pull request#432vitkl2026-02-22 15:50
- Pull request#432vitkl2026-02-22 15:21
- Issue comment#422Sophielsn2026-02-09 17:01Xenium
- Issue#431shenxiaotianCNS2026-01-20 12:15can cell2location support RTX 50 series card？
- Issue comment#395pedrocastillorosique2026-01-09 11:49Questions about the cell abundance
- Issue comment#356cafferychen7772025-12-26 14:01Cell2Location on large datasets
- Issue comment#358cafferychen7772025-12-26 13:56Compatibility with VisiumHD
- Issue comment#430aowenson-imm2025-11-27 17:33model load: `Missing key(s) in state_dict`
- Issue comment#429vitkl2025-11-27 17:08Is it feasible to use cell2location to distinguish between malignant and non-malignant states of the same cell type?
- Issue#430aowenson-imm2025-11-27 12:11model load: `Missing key(s) in state_dict`
- Issue#428nine-sarayut2025-11-14 23:41Expected value argument (Tensor of shape (2500, 12666))
- Issue#428nine-sarayut2025-11-14 23:41Expected value argument (Tensor of shape (2500, 12666))
- Issue#426AtlasMaroc2025-11-08 11:30Does cell2location support multi-gpu ?
- Issue#426AtlasMaroc2025-11-08 11:30Does cell2location support multi-gpu ?
- Pull request#425huxs0012025-10-23 05:21
- Issue#424huxs0012025-10-23 03:11cell2location_tutorial.ipynb cell 29 not working for 'Series' object has no attribute 'nonzero
- Issue#424huxs0012025-10-23 03:11cell2location_tutorial.ipynb cell 29 not working for 'Series' object has no attribute 'nonzero
- Issue#422Sophielsn2025-09-30 21:42Xenium
- Issue comment#421Qkrdudtj-ep2025-09-25 21:57Runtime differences in version 0.1.3 and 0.1.4. [related to batch_size=None and training on large data - see issue #365]
- Issue comment#404vitkl2025-09-25 21:48OutOFMemory when loading trained mod, even in the same env
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 171 stars here means stars gained during the window, not the repo's star count.