A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
active 2024-08-25 → 2026-07-07 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 682 days from 2024-08-25 to 2026-07-07. Pushes: 72 total, peak 7 in a day. Pull requests: 33 total, peak 3 in a day. Issues: 13 total, peak 3 in a day. Comments: 30 total, peak 7 in a day. Stars: 4 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| dweindl | 62 | 37 | 14 | 4 |
| m-philipps | 37 | 19 | 5 | 4 |
| dilpath | 25 | 5 | 2 | 8 |
| stephanmg | 17 | 2 | 3 | 9 |
| plakrisenko | 17 | 7 | 3 | 5 |
| dependabot[bot] | 5 | 0 | 5 | 0 |
| EchoRLiu | 1 | 1 | 0 | 0 |
| sebapersson | 1 | 0 | 1 | 0 |
| FFroehlich | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#305dependabot[bot]2026-04-13 22:18
- Pull request#305dependabot[bot]2026-04-13 22:18
- Pull request#305dependabot[bot]2026-04-13 22:18
- Issue comment#302stephanmg2026-03-05 16:38Logo suggestion
- Issue comment#302stephanmg2026-03-04 16:24Logo suggestion
- Pull request#301plakrisenko2026-02-11 16:14
- Releasem-philipps2026-01-22 22:04Benchmark Models PEtab v2026.01.22
- Issue#277m-philipps2026-01-22 18:09Incorrect simulation table for Weber_BMC2015
- Issue#257m-philipps2026-01-22 18:08Add Liu_IFACPapersOnLine2025
- Pull request#300m-philipps2026-01-06 10:47
- Pull request#299m-philipps2026-01-02 22:48
- Issue comment#292dilpath2025-11-26 11:55Vis fixes3
- Issue comment#296dweindl2025-11-26 11:49GHA: Add simulation workflow
- Pull request#296dweindl2025-11-25 11:00
- Pull request#296dweindl2025-11-25 11:00
- Pull request#293dweindl2025-11-24 14:09
- Pull request#293dweindl2025-11-24 14:09
- Issue#156stephanmg2025-11-21 16:39Add missing visualization files
- Issue comment#291stephanmg2025-11-21 15:54add Blasi visualization spec
- Issue#156plakrisenko2025-11-21 14:59Add missing visualization files
- Issue#2stephanmg2025-11-21 09:32Add new model Rodman et al. (2019)
- Pull request#290stephanmg2025-11-20 16:32
- Pull request#289stephanmg2025-11-20 09:39
- Issue comment#99dilpath2025-11-12 09:27Add Bertozzi_PNAS2020 (Bertozzi et al., 2020)
- Issue comment#288plakrisenko2025-11-11 20:56add visualization spec for Raimundez model
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 4 stars here means stars gained during the window, not the repo's star count.