Clustering cONtigs with COverage and ComposiTion
active 2023-08-24 → 2026-07-03 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1045 days from 2023-08-24 to 2026-07-03. Pushes: 0 total, peak 0 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 10 total, peak 1 in a day. Comments: 14 total, peak 2 in a day. Stars: 21 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| ShevchenkoAlla | 3 | 0 | 0 | 2 |
| alneberg | 2 | 0 | 0 | 2 |
| jiangshf5 | 2 | 0 | 0 | 1 |
| ramnageena11 | 2 | 0 | 0 | 1 |
| FahimTheWanderer | 2 | 0 | 0 | 1 |
| leonmhartman | 2 | 0 | 0 | 2 |
| HouyuZhang | 2 | 0 | 0 | 1 |
| KonstantinaRi | 2 | 0 | 0 | 1 |
| fb87fb | 1 | 0 | 0 | 0 |
| anw-sh | 1 | 0 | 0 | 0 |
| emily-ap | 1 | 0 | 0 | 0 |
| openpaul | 1 | 0 | 1 | 0 |
| jvollme | 1 | 0 | 0 | 1 |
| hugolefeuvre | 1 | 0 | 0 | 1 |
| Guowei-nju | 1 | 0 | 0 | 0 |
| danchurch | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#340KonstantinaRi2025-06-23 15:41error with coverage table
- Issue comment#339KonstantinaRi2025-06-23 09:47Problem with concoct_coverage_table.py : TypeError: write() argument must be str, not bytes
- Issue comment#339FahimTheWanderer2025-05-29 06:42Problem with concoct_coverage_table.py : TypeError: write() argument must be str, not bytes
- Issue comment#339alneberg2025-05-16 12:39Problem with concoct_coverage_table.py : TypeError: write() argument must be str, not bytes
- Issue#339FahimTheWanderer2025-05-16 12:29Problem with concoct_coverage_table.py : TypeError: write() argument must be str, not bytes
- Issue comment#330ShevchenkoAlla2025-05-03 15:23Why is concoct using all available threads instead of the mentioned number?
- Issue comment#337ShevchenkoAlla2025-01-27 12:39how to write the number of threads to use with cut_up_fasta.py
- Issue comment#337alneberg2025-01-27 08:32how to write the number of threads to use with cut_up_fasta.py
- Issue#337ShevchenkoAlla2025-01-26 12:05how to write the number of threads to use with cut_up_fasta.py
- Issue comment#307danchurch2025-01-20 08:42Unresolved problem with concoct_coverage_table.py - write() argument must be str, not bytes
- Issue comment#329hugolefeuvre2024-11-27 22:09Concoct endless warning due to OpenBLAS
- Issue comment#329jvollme2024-11-25 13:33Concoct endless warning due to OpenBLAS
- Issue comment#325leonmhartman2024-10-17 05:18How to run concoct
- Issue comment#334leonmhartman2024-10-17 05:14TypeError: write() argument must be str, not bytes
- Issue#335emily-ap2024-08-16 22:14Concoct won't read indexed bam file
- Issue comment#334ramnageena112024-05-28 19:52TypeError: write() argument must be str, not bytes
- Issue#333fb87fb2024-05-13 18:13logmodel.fit(X_train, y_train) not working
- Issue#332ramnageena112024-02-21 21:36Error in data type (feature table)
- Issue comment#204jiangshf52024-02-07 11:32Extracting bins returns an error (KeyError)
- Issue#331jiangshf52024-02-06 14:29extract_fasta_bins.py problem
- Pull request#285openpaul2024-01-28 13:08
- Issue#330anw-sh2023-10-05 13:05Why is concoct using all available threads instead of the mentioned number?
- Issue comment#329HouyuZhang2023-08-25 06:47Concoct endless warning due to OpenBLAS
- Issue#329HouyuZhang2023-08-25 06:47Concoct endless warning due to OpenBLAS
- Issue#328Guowei-nju2023-08-24 08:05CONCOCT 0.4.1
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 21 stars here means stars gained during the window, not the repo's star count.