Representation and manipulation of short genomic alignments
active 2023-09-09 → 2026-04-28 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 963 days from 2023-09-09 to 2026-04-28. Pushes: 23 total, peak 3 in a day. Pull requests: 8 total, peak 3 in a day. Issues: 6 total, peak 2 in a day. Comments: 24 total, peak 5 in a day. Stars: 5 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| hpages | 39 | 21 | 5 | 12 |
| fedxa | 4 | 0 | 2 | 2 |
| SunSummoner | 4 | 0 | 0 | 4 |
| jwokaty | 3 | 0 | 0 | 3 |
| LiNk-NY | 2 | 2 | 0 | 0 |
| rcastelo | 2 | 0 | 1 | 0 |
| jmacdon | 2 | 0 | 0 | 1 |
| 3top15243 | 2 | 0 | 0 | 1 |
| sunta3iouxos | 2 | 0 | 0 | 1 |
| wangguiqian | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#27hpages2025-04-29 14:48Permission for SweaveToRmd
- Issue comment#24hpages2025-04-21 18:47Converting OverlapEncodings Rnw file to Rmd
- Pull request#24hpages2025-04-21 18:47
- Pull request#28hpages2025-04-21 18:44
- Issue comment#373top152432025-02-05 10:12Issues with counting transcripts using summarizeOverlaps(IntersectionNotEmpty)
- Issue comment#37jmacdon2025-02-04 14:22Issues with counting transcripts using summarizeOverlaps(IntersectionNotEmpty)
- Issue#37jmacdon2025-02-04 14:22Issues with counting transcripts using summarizeOverlaps(IntersectionNotEmpty)
- Issue#373top152432025-02-04 10:31Issues with counting transcripts using summarizeOverlaps(IntersectionNotEmpty)
- Issue comment#36hpages2024-11-06 19:21summarizeOverlaps warnings
- Issue comment#36sunta3iouxos2024-11-05 18:24summarizeOverlaps warnings
- Issue comment#36hpages2024-10-31 03:24summarizeOverlaps warnings
- Issue#36sunta3iouxos2024-10-30 12:05summarizeOverlaps warnings
- Issue comment#27SunSummoner2024-03-27 15:02Permission for SweaveToRmd
- Issue comment#27jwokaty2024-03-26 21:03Permission for SweaveToRmd
- Pull request#22hpages2024-03-25 19:47
- Issue comment#22hpages2024-03-25 19:47Convert WorkingWithAlignedNucleotides from Rnw to Rmd
- Issue comment#27hpages2024-03-25 17:54Permission for SweaveToRmd
- Issue comment#27SunSummoner2024-03-25 17:49Permission for SweaveToRmd
- Issue comment#28hpages2024-03-25 16:59Convert summarizeOverlaps.Rnw to summarizeOverlaps.Rmd
- Issue comment#24hpages2024-03-25 16:59Converting OverlapEncodings Rnw file to Rmd
- Issue comment#32hpages2024-01-16 17:00Bugfix in isCompatibleWithSkippedExons() for single-end read alignments w/ more than 3 junctions
- Pull request#32hpages2024-01-16 16:59
- Issue comment#34hpages2024-01-09 22:15Fix of mapToAlignments emitting extra ranges for mapping to the skipped positions at start
- Issue comment#12fedxa2024-01-07 23:02mapFromAlignments() and soft-clipping
- Issue comment#12fedxa2024-01-07 22:47mapFromAlignments() and soft-clipping
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 5 stars here means stars gained during the window, not the repo's star count.