Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
active 2023-08-22 → 2026-04-28 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 981 days from 2023-08-22 to 2026-04-28. Pushes: 16 total, peak 2 in a day. Pull requests: 6 total, peak 2 in a day. Issues: 9 total, peak 1 in a day. Comments: 47 total, peak 9 in a day. Stars: 6 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| hpages | 29 | 9 | 2 | 17 |
| bschilder | 16 | 0 | 3 | 13 |
| LiNk-NY | 9 | 6 | 0 | 3 |
| vjcitn | 6 | 0 | 0 | 6 |
| mtmorgan | 4 | 1 | 0 | 3 |
| XqKang | 3 | 0 | 0 | 1 |
| mohammedemamkhattabunipd | 3 | 0 | 0 | 1 |
| ChangqingW | 2 | 0 | 0 | 1 |
| DarioS | 1 | 0 | 0 | 0 |
| js2264 | 1 | 0 | 1 | 0 |
| diego-rt | 1 | 0 | 0 | 0 |
| NorbertXYZ | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#66NorbertXYZ2025-09-03 05:19Install / compile problem on FreeBSD
- Issue comment#65mtmorgan2025-07-18 16:13scanTabix() returning all rows, rather than a subset
- Issue#65hexylena2025-07-18 13:09scanTabix() returning all rows, rather than a subset
- Issue comment#64ChangqingW2025-01-29 09:13Unrecognized nucleotide 'B' error when sequence field in BAM file omitted
- Issue#64ChangqingW2025-01-29 09:04Unrecognized nucleotide 'B' error when sequence field in BAM file omitted
- Issue#63DarioS2024-11-21 21:00Samtools Stats Execution and Parsing
- Issue#62mohammedemamkhattabunipd2024-04-08 11:15Compilation problem on macOS Sonoma 14.2.1
- Issue comment#62mohammedemamkhattabunipd2024-04-08 11:15Compilation problem on macOS Sonoma 14.2.1
- Issue comment#62hpages2024-04-05 18:19Compilation problem on macOS Sonoma 14.2.1
- Issue comment#62vjcitn2024-04-05 15:41Compilation problem on macOS Sonoma 14.2.1
- Issue#62mohammedemamkhattabunipd2024-04-05 15:19Compilation problem on macOS Sonoma 14.2.1
- Issue comment#56vjcitn2024-02-15 10:20CRAM support - why not?
- Issue#61hpages2024-02-14 18:06FEATURE REQUEST: Improve seqinfo(<BamFile>) to return the genome assembly associated with each sequence
- Issue comment#56vjcitn2024-02-14 17:58CRAM support - why not?
- Issue comment#56hpages2024-02-14 17:55CRAM support - why not?
- Issue comment#60hpages2024-01-16 19:16Fix gcc's "format-security" warning
- Pull request#60hpages2024-01-16 19:16
- Pull request#60js22642024-01-16 09:43
- Issue comment#48hpages2023-12-28 23:42Add rworkflows
- Pull request#48hpages2023-12-28 23:42
- Issue comment#48bschilder2023-12-28 18:17Add rworkflows
- Issue comment#48hpages2023-12-22 17:50Add rworkflows
- Issue comment#48bschilder2023-12-21 19:17Add rworkflows
- Issue#59XqKang2023-11-14 22:11Rsamtools pileup and Pysam pileup output discrepancy
- Issue comment#59hpages2023-11-02 01:36Rsamtools pileup and Pysam pileup output discrepancy
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 6 stars here means stars gained during the window, not the repo's star count.