Perform pairwise sequence alignments
active 2024-03-21 → 2026-04-28 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 769 days from 2024-03-21 to 2026-04-28. Pushes: 6 total, peak 2 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 9 total, peak 5 in a day. Comments: 4 total, peak 1 in a day. Stars: 1 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| hpages | 8 | 6 | 0 | 2 |
| jayoung | 2 | 0 | 0 | 1 |
| LTLA | 2 | 0 | 0 | 0 |
| traversc | 2 | 0 | 0 | 0 |
| kullrich | 1 | 0 | 1 | 0 |
| haruosuz | 1 | 0 | 0 | 0 |
| rubenalv | 1 | 0 | 0 | 0 |
| peteryzheng | 1 | 0 | 0 | 0 |
| DanielHoffmann32 | 1 | 0 | 0 | 1 |
| Close-your-eyes | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#17DanielHoffmann322026-04-05 07:12substitution matrix not properly reported in output
- Issue comment#15jayoung2025-10-23 18:41stringDist using substitutionMatrix - inconsistent scores on the diagonal
- Issue#15jayoung2025-10-22 21:59stringDist using substitutionMatrix - inconsistent scores on the diagonal
- Issue#13rubenalv2025-08-18 11:58Bug: pattern() error "Error in pattern(a) : Pattern must be based on grob"
- Pull request#12kullrich2025-03-14 04:49
- Issue#11traversc2025-02-28 02:30New bug with pairwiseAlignment in version 1.3.2
- Issue comment#8hpages2024-04-04 23:48Is there a way to obtain the trace back matrix in align_pairwiseAlignment.c?
- Issue#8peteryzheng2024-04-04 23:43Is there a way to obtain the trace back matrix in align_pairwiseAlignment.c?
- Issue comment#7hpages2024-03-29 14:40installation error
- Issue#6LTLA2024-03-23 01:29Unintuitive results with N's in pairwiseAlignment
- Issue#5LTLA2024-03-23 01:22alignedSubject/Pattern takes a long time to run
- Issue#4traversc2024-03-23 01:20Incorrect alignment/score when using gap penalty = Inf
- Issue#3haruosuz2024-03-23 01:17vignettes "Pairwise Sequence Alignments"
- Issue#2Close-your-eyes2024-03-23 01:10Terminal gaps not considered as InDel
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 1 stars here means stars gained during the window, not the repo's star count.