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BioinfoMachineLearning/PoseBench

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Comprehensive benchmarking of protein-ligand structure prediction methods. (Nature Machine Intelligence)

active 2024-12-242026-06-18 (UTC)

Partial coverage12,579 / 14,301 hourly files (88%) · 2 absent upstream · 1,716 failed, retryable2024-12-232026-08-11 (UTC)— sampled evenly across the window, so rankings and trends hold; absolute counts scale up.
Events
243
Pushes
145
Pull requests
4
Issues
3
Stars
56
Forks
3

Activity over time

Daily event counts in the loaded window

Line chart, 542 days from 2024-12-24 to 2026-06-18. Pushes: 145 total, peak 20 in a day. Pull requests: 4 total, peak 2 in a day. Issues: 3 total, peak 1 in a day. Comments: 11 total, peak 2 in a day. Stars: 56 total, peak 2 in a day.

  • Pushes
  • Pull requests
  • Issues
  • Comments
  • Stars

Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.

Top contributors

Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity

ContributorContributionsPushesPRsComments
amorehead14513545
github-actions[bot]101000
njujiangjk3002
Amshoreline2001
dependabot[bot]2002
lhoestq1001

Recent activity

Latest issues, pull requests and releases

  • Releaseamorehead2026-03-21 00:37
    v1.1.0
  • Issue comment#20amorehead2026-03-21 00:32
    Bug in select_primary_ligands_in_df: true ligand coordinates are modified during fragment selection, causing artificially low RMSD
  • Pull request#22amorehead2026-03-21 00:24
  • Issue comment#20amorehead2026-03-05 04:27
    Bug in select_primary_ligands_in_df: true ligand coordinates are modified during fragment selection, causing artificially low RMSD
  • Issue comment#19dependabot[bot]2026-01-06 16:37
    Bump biopython from 1.79 to 1.86
  • Issue comment#18amorehead2025-11-17 05:57
    Dependency Conflict Issues with fsspec and scipy during PoseBench Environment Setup
  • Issue comment#18njujiangjk2025-11-17 02:57
    Dependency Conflict Issues with fsspec and scipy during PoseBench Environment Setup
  • Issue comment#18amorehead2025-11-15 19:56
    Dependency Conflict Issues with fsspec and scipy during PoseBench Environment Setup
  • Issue comment#18njujiangjk2025-11-11 08:08
    Dependency Conflict Issues with fsspec and scipy during PoseBench Environment Setup
  • Issue#18njujiangjk2025-11-10 10:53
    Dependency Conflict Issues with fsspec and scipy during PoseBench Environment Setup
  • Issue comment#13lhoestq2025-08-13 13:25
    Release PoseBench datasets on Hugging Face
  • Releaseamorehead2025-08-11 18:50
    v0.7.0
  • Releaseamorehead2025-08-11 18:13
    v0.7.0
  • Releaseamorehead2025-08-11 18:12
    v0.7.0
  • Issue comment#14amorehead2025-04-20 17:52
    Discrepancy Analysis Between AF3 Predictions and Reported Results
  • Issue#14amorehead2025-04-20 17:52
    Discrepancy Analysis Between AF3 Predictions and Reported Results
  • Issue comment#14Amshoreline2025-04-11 02:16
    Discrepancy Analysis Between AF3 Predictions and Reported Results
  • Issue#14Amshoreline2025-04-08 03:25
    Discrepancy Analysis Between AF3 Predictions and Reported Results
  • Releaseamorehead2025-02-09 21:23
    v0.6.0
  • Pull request#12amorehead2025-02-09 21:20
  • Pull request#12amorehead2025-02-09 21:20
  • Issue comment#11dependabot[bot]2025-01-18 15:32
    Bump biopython from 1.79 to 1.85
  • Pull request#11amorehead2025-01-18 15:32

Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 56 stars here means stars gained during the window, not the repo's star count.