A novel machine learning pipeline to analyse spatial transcriptomics data
active 2024-06-20 → 2026-07-12 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 753 days from 2024-06-20 to 2026-07-12. Pushes: 138 total, peak 13 in a day. Pull requests: 7 total, peak 2 in a day. Issues: 31 total, peak 7 in a day. Comments: 22 total, peak 7 in a day. Stars: 40 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| newmana | 177 | 138 | 6 | 14 |
| BradBalderson | 4 | 0 | 0 | 3 |
| ywzhang071394 | 3 | 0 | 0 | 1 |
| ynpan910 | 2 | 0 | 0 | 0 |
| SA-coder-netizen | 2 | 0 | 0 | 1 |
| marcouderzo | 2 | 0 | 0 | 1 |
| Mark-wt | 1 | 0 | 0 | 0 |
| riccardobergamin | 1 | 0 | 0 | 0 |
| dependabot[bot] | 1 | 0 | 1 | 0 |
| matt-sd-watson | 1 | 0 | 0 | 1 |
| alexpengyl1 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#344ynpan9102026-03-29 03:48CCI analysis for imaging-based ST data
- Releasenewmana2026-02-24 04:28stLearn 1.3.0
- Pull request#343newmana2026-02-24 04:26
- Pull request#343newmana2026-02-24 04:19
- Issue#339newmana2025-11-25 22:21ImportError
- Issue comment#339newmana2025-11-25 22:21ImportError
- Releasenewmana2025-10-20 23:13stLearn 1.2.2
- Issue comment#335matt-sd-watson2025-10-01 15:10stlearn launch have bug
- Issue#333newmana2025-09-19 05:03Turn off imputation and only correct for technical noise/dropout in st.spatial.SME.SME_normalize()
- Releasenewmana2025-09-17 04:21stLearn 1.1.3
- Releasenewmana2025-09-17 04:02stLearn 1.1.2
- Pull request#334newmana2025-09-17 03:59
- Issue#325newmana2025-09-17 01:10TypeError: '<' not supported between instances of 'float' and 'NoneType' inst.spatial.trajectory analysis
- Issue#333newmana2025-09-17 01:09Turn off imputation and only correct for technical noise/dropout in st.spatial.SME.SME_normalize()
- Issue#333ynpan9102025-08-22 02:32Turn off imputation and only correct for technical noise/dropout in st.spatial.SME.SME_normalize()
- Issue comment#332newmana2025-07-28 22:18Workflow to Explore Trajectories from Root Cluster
- Issue comment#332marcouderzo2025-07-28 08:38Workflow to Explore Trajectories from Root Cluster
- Issue#332newmana2025-07-22 07:37Workflow to Explore Trajectories from Root Cluster
- Issue#332newmana2025-07-22 06:36Workflow to Explore Trajectories from Root Cluster
- Issue comment#332newmana2025-07-22 06:36Workflow to Explore Trajectories from Root Cluster
- Issue#332marcouderzo2025-07-15 10:04Workflow to Explore Trajectories from Root Cluster
- Issue comment#330ywzhang0713942025-07-11 19:37SME_normalize reports MemoryError when analyzing Xenium
- Issue#330ywzhang0713942025-07-11 19:37SME_normalize reports MemoryError when analyzing Xenium
- Issue#331newmana2025-07-09 23:02Running Pseudotime Spatial Trajectory Inference on Already Clustered Data
- Issue comment#331newmana2025-07-09 23:02Running Pseudotime Spatial Trajectory Inference on Already Clustered Data
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 40 stars here means stars gained during the window, not the repo's star count.