Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
active 2024-09-27 → 2026-04-07 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 558 days from 2024-09-27 to 2026-04-07. Pushes: 0 total, peak 0 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 9 total, peak 1 in a day. Comments: 5 total, peak 1 in a day. Stars: 18 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| gianfilippo | 3 | 0 | 0 | 1 |
| aligogon | 1 | 0 | 0 | 1 |
| dbhayal9 | 1 | 0 | 0 | 0 |
| ralanany | 1 | 0 | 0 | 0 |
| valeu | 1 | 0 | 0 | 1 |
| hushaoqiang | 1 | 0 | 0 | 1 |
| deathstar550 | 1 | 0 | 0 | 0 |
| boyuuuuu0930 | 1 | 0 | 0 | 0 |
| vyomeshj209 | 1 | 0 | 0 | 0 |
| biocodeworld | 1 | 0 | 0 | 1 |
| MaryGoAround | 1 | 0 | 0 | 0 |
| BhumikaPriyadarshini | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#163deathstar5502026-02-16 03:14MakeGraph2.0.R
- Issue comment#162gianfilippo2025-12-04 03:17BAF > 0 when CopyNumber = 0
- Issue#162gianfilippo2025-12-04 02:57BAF > 0 when CopyNumber = 0
- Issue#161gianfilippo2025-12-03 03:32BAF and estimatedBAF
- Issue#160ralanany2025-11-05 09:14I didn't get any of these files: _CNV. , _BAF.txt, ratio.txt
- Issue comment#15aligogon2025-06-27 10:43Difference between pre-made pileup and mini-pileups
- Issue#157boyuuuuu09302025-05-21 01:14Download problem about mappability tracks
- Issue comment#39biocodeworld2025-05-10 06:58FREEC was not able to extract reads
- Issue#156vyomeshj2092025-03-01 12:02Baseline Calculation for Tumor only Analsysis
- Issue comment#155valeu2025-01-03 13:50Error: unable to open
- Issue#155dbhayal92025-01-03 05:37Error: unable to open
- Issue comment#127hushaoqiang2024-11-22 01:32Questions about the output of CNVs and the use of assess_significance
- Issue#153MaryGoAround2024-10-15 20:17Interpreting the results
- Issue#152BhumikaPriyadarshini2024-09-27 20:16Regions missing from ratio file
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 18 stars here means stars gained during the window, not the repo's star count.