A variant calling workflow suitable for both checking genotypes and processing data for BSA experiments
active 2023-08-17 → 2025-12-03 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 840 days from 2023-08-17 to 2025-12-03. Pushes: 69 total, peak 14 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 3 total, peak 2 in a day. Comments: 5 total, peak 4 in a day. Stars: 0 total, peak 0 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| cmatKhan | 77 | 69 | 0 | 5 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#4cmatKhan2024-04-25 19:42notes on kn99 variant calling in recombinants
- Issue comment#4cmatKhan2024-04-25 19:34notes on kn99 variant calling in recombinants
- Issue comment#4cmatKhan2024-04-25 19:28notes on kn99 variant calling in recombinants
- Issue comment#4cmatKhan2024-04-25 13:31notes on kn99 variant calling in recombinants
- Issue#4cmatKhan2024-04-24 21:56notes on kn99 variant calling in recombinants
- Issue comment#1cmatKhan2023-10-19 16:43filter out duplication calls over rRNA in KN99
- Issue#3cmatKhan2023-10-19 16:34output list of genes whose CDS overlaps deletions
- Issue#2cmatKhan2023-10-19 16:32check deletion threshold -- seems not to be filtering
- ReleasecmatKhan2023-09-19 18:23v1.3.0
- ReleasecmatKhan2023-08-28 13:19v1.2.0
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.