🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens
active 2023-08-15 → 2026-08-15 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1097 days from 2023-08-15 to 2026-08-15. Pushes: 1,255 total, peak 24 in a day. Pull requests: 36 total, peak 18 in a day. Issues: 67 total, peak 3 in a day. Comments: 154 total, peak 17 in a day. Stars: 50 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| HAISeq | 619 | 616 | 3 | 0 |
| jvhagey | 465 | 354 | 27 | 63 |
| nvlachos | 190 | 183 | 1 | 2 |
| NoForkJustCommit | 94 | 77 | 0 | 13 |
| slsevilla | 17 | 0 | 2 | 6 |
| tang27abu | 10 | 0 | 0 | 10 |
| bdelavan | 10 | 0 | 0 | 6 |
| anthony-harrington | 9 | 9 | 0 | 0 |
| jfnjdoh | 8 | 0 | 0 | 5 |
| Ashita2619 | 7 | 0 | 0 | 7 |
| SeanSierra-Patev | 5 | 0 | 0 | 3 |
| vascokarla | 5 | 0 | 0 | 3 |
| Baofrank | 5 | 5 | 0 | 0 |
| cimendes | 5 | 0 | 0 | 2 |
| michellescribner | 5 | 0 | 0 | 4 |
| kprus | 4 | 0 | 0 | 3 |
| Alyssa-Kent | 4 | 4 | 0 | 0 |
| AmyR05 | 4 | 0 | 0 | 3 |
| TK-DPH | 3 | 0 | 0 | 2 |
| Alangs-bio | 3 | 0 | 0 | 2 |
Recent activity
Latest issues, pull requests and releases
- Issue#200jvhagey2026-04-13 21:07MLST scheme for ecloacae not found
- Issue comment#200hkunerth2026-03-13 20:21MLST scheme for ecloacae not found
- Issue comment#200hkunerth2026-03-11 18:32MLST scheme for ecloacae not found
- Issue#200jvhagey2026-02-18 20:22MLST scheme for ecloacae not found
- Issue comment#197neranjan0072026-01-30 16:45Phoenix v2.2.0 error when running in Terra
- Issue comment#197neranjan0072026-01-29 19:05Phoenix v2.2.0 error when running in Terra
- Issue comment#197neranjan0072026-01-29 18:09Phoenix v2.2.0 error when running in Terra
- Pull request#198jvhagey2026-01-28 19:38
- Pull request#199jvhagey2026-01-28 19:32
- Issue#197jvhagey2026-01-28 19:12Phoenix v2.2.0 error when running in Terra
- Issue comment#196jfnjdoh2026-01-28 13:24Shigella samples fail shigapass and fastani check
- Issue comment#151jvhagey2026-01-26 16:51Move params checks upstream to main.nf
- Issue#151jvhagey2026-01-26 16:50Move params checks upstream to main.nf
- Issue#152jvhagey2026-01-26 14:56Refactor failed summary handling
- Issue comment#152jvhagey2026-01-26 14:56Refactor failed summary handling
- Releasejvhagey2026-01-07 06:20v2.2.0
- Pull request#193jvhagey2026-01-07 05:30
- Issue comment#190jenniferlu7172025-08-27 22:20"Species" column missing in the terra.bio Data tab for Phoenix
- Issue comment#190jenniferlu7172025-08-26 17:47"Species" column missing in the terra.bio Data tab for Phoenix
- Issue comment#189Alangs-bio2025-06-02 16:45[BUG] - Fresh install to run CDC_PHOENIX in WSL fails to successfully complete test sample
- Issue comment#189Alangs-bio2025-06-02 15:25[BUG] - Fresh install to run CDC_PHOENIX in WSL fails to successfully complete test sample
- Issue#189Alangs-bio2025-05-30 16:35[BUG] - Fresh install to run CDC_PHOENIX in WSL fails to successfully complete test sample
- Issue#188slsevilla2025-05-28 12:59Discrepancies between schemas / Two EColi species
- Pull request#93jvhagey2025-05-19 20:04
- Issue comment#180NoForkJustCommit2025-05-08 18:47Documentation for reference databases
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 50 stars here means stars gained during the window, not the repo's star count.