Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
active 2023-08-15 → 2026-04-27 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 987 days from 2023-08-15 to 2026-04-27. Pushes: 78 total, peak 24 in a day. Pull requests: 61 total, peak 14 in a day. Issues: 18 total, peak 4 in a day. Comments: 23 total, peak 4 in a day. Stars: 2 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| dthoward96 | 136 | 65 | 53 | 12 |
| rchau88 | 18 | 13 | 5 | 0 |
| leebrian | 6 | 0 | 0 | 5 |
| DOH-KEW4303 | 6 | 0 | 0 | 1 |
| whitney | 4 | 0 | 2 | 1 |
| dbtara | 3 | 0 | 0 | 3 |
| erikwolfsohn | 3 | 0 | 1 | 1 |
| nbx0 | 2 | 0 | 0 | 0 |
| peterwc-cdc | 1 | 0 | 0 | 0 |
| ybdong919 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#137DOH-KEW43032026-04-27 17:16[FEATURE REQUEST] Norovirus
- Releasedthoward962026-02-20 17:18V1.3.93
- Pull request#136dthoward962026-02-20 17:17
- Pull request#135dthoward962026-02-18 19:58
- Issue comment#133dthoward962026-02-12 14:52[BUG] submissions not progressing from Biosample to Genbank
- Pull request#134dthoward962026-02-12 14:50
- Issue#131DOH-KEW43032026-02-04 20:49[BUG] Error: Upload log columns are incorrect. Cannot process submissions. Error: Unable to pretty print pandera error message for data. Error message is:
- Issue comment#131DOH-KEW43032026-02-04 20:02[BUG] Error: Upload log columns are incorrect. Cannot process submissions. Error: Unable to pretty print pandera error message for data. Error message is:
- Issue comment#131dthoward962026-01-21 17:24[BUG] Error: Upload log columns are incorrect. Cannot process submissions. Error: Unable to pretty print pandera error message for data. Error message is:
- Pull request#132dthoward962026-01-21 17:23
- Pull request#132dthoward962026-01-21 17:23
- Releasedthoward962026-01-09 15:21V1.3.8
- Releasedthoward962026-01-02 19:10V1.3.7
- Pull request#129dthoward962026-01-02 19:09
- Pull request#129dthoward962026-01-02 19:08
- Issue#124DOH-KEW43032025-09-17 22:03[BUG] missing python libraries
- Releasedthoward962025-08-28 18:17V1.3.4
- Pull request#122dthoward962025-08-28 18:10
- Issue#121DOH-KEW43032025-08-19 13:56Submit to Genbank without including .cmt
- Issue#120DOH-KEW43032025-08-07 21:07[FEATURE REQUEST] test submissions to all three databases
- Issue#111ybdong9192025-02-23 18:38why to find a user guide?
- Releasedthoward962024-12-11 20:00V1.2.6 Release
- Issue#91dthoward962024-10-03 19:26[FEATURE REQUEST] Add NCBI databases TSA and WGS
- Pull request#90dthoward962024-09-27 20:35
- Pull request#90dthoward962024-09-27 20:35
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 2 stars here means stars gained during the window, not the repo's star count.