Building the compacted de Bruijn graph efficiently from references or reads.
active 2023-08-21 → 2026-08-16 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1092 days from 2023-08-21 to 2026-08-16. Pushes: 60 total, peak 11 in a day. Pull requests: 7 total, peak 2 in a day. Issues: 32 total, peak 3 in a day. Comments: 61 total, peak 10 in a day. Stars: 22 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
Recent activity
Latest issues, pull requests and releases
- Issue comment#60Copilot2026-01-28 06:12Add in-memory GFA-reduced output with --collate-output-in-mem flag (Step 1 complete)
- Issue comment#60rob-p2026-01-28 05:07Add in-memory GFA-reduced output with parallel processing and optional input-order preservation
- Issue comment#60rob-p2026-01-28 02:17[WIP] Add in-memory GFA-reduced output with parallel processing and command-line flag - INCOMPLETE
- Issue comment#60Copilot2026-01-28 01:26[WIP] Add in-memory GFA-reduced output with parallel processing and command-line flag - INCOMPLETE
- Issue comment#60rob-p2026-01-27 23:51Add in-memory GFA-reduced output with parallel processing, command-line flag, and flexible output ordering
- Issue comment#60Copilot2026-01-27 23:35Add in-memory GFA-reduced output with parallel processing, command-line flag, and flexible output ordering
- Issue comment#60Copilot2026-01-27 23:25Add in-memory GFA-reduced output with parallel processing, command-line flag, and flexible output ordering
- Issue comment#60rob-p2026-01-27 23:24Add in-memory GFA-reduced output with parallel processing, command-line flag, and flexible output ordering
- Issue comment#60Copilot2026-01-27 23:09Add in-memory GFA-reduced output with parallel processing, command-line flag, and flexible output ordering
- Issue comment#60rob-p2026-01-27 23:00Add in-memory GFA-reduced output with parallel processing, command-line flag, and flexible output ordering
- Issue comment#60rob-p2026-01-27 22:26Add in-memory GFA-reduced output with parallel processing, command-line flag, and flexible output ordering
- Issue comment#60Copilot2026-01-27 21:50Add in-memory GFA-reduced output with parallel processing and command-line flag
- Issue comment#60Copilot2026-01-27 20:52Add in-memory GFA-reduced output with parallel processing and command-line flag
- Issue comment#60Copilot2026-01-27 16:53Add in-memory GFA-reduced output for improved short sequence efficiency
- Issue#59ctb2025-10-26 19:37Is there any way to get the connectivity information when using cuttlefish 2?
- Issue#58ctb2025-10-15 15:08sourmash and cuttlefish disagree on overlap of k-mers
- Issue comment#58ctb2025-10-15 15:08sourmash and cuttlefish disagree on overlap of k-mers
- Pull request#55jamshed2025-04-29 19:46
- Issue comment#50jamshed2025-04-28 21:15Cuttlefish3 does not build because RabbitFX is missing a header
- Issue#50jamshed2025-04-28 21:15Cuttlefish3 does not build because RabbitFX is missing a header
- Pull request#43jamshed2025-04-13 20:21
- Issue#57artorias1112025-04-09 12:55Cuttlefish as an assembler?
- Issue#56karlisdaga2025-03-25 13:35Make install cuttlefish3
- Pull request#55imartayan2025-03-07 18:34
- Issue#53sebschmi2025-03-04 07:33CF3 outputs almost nothing when run on 2505 human genomes
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 22 stars here means stars gained during the window, not the repo's star count.