LoFreq Star: Sensitive variant calling from sequencing data
active 2023-08-16 → 2026-04-12 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 971 days from 2023-08-16 to 2026-04-12. Pushes: 4 total, peak 4 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 14 total, peak 1 in a day. Comments: 20 total, peak 3 in a day. Stars: 6 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| andreas-wilm | 17 | 4 | 0 | 10 |
| balayev1 | 5 | 0 | 0 | 3 |
| mkadlof | 2 | 0 | 0 | 1 |
| YangJingqii | 2 | 0 | 0 | 0 |
| masterrite | 2 | 0 | 0 | 1 |
| Ge-Wu-pir | 2 | 0 | 0 | 1 |
| ChenDepp | 1 | 0 | 0 | 1 |
| jchorl | 1 | 0 | 1 | 0 |
| tanu06 | 1 | 0 | 0 | 0 |
| LiuH2020 | 1 | 0 | 0 | 0 |
| antonkratz | 1 | 0 | 0 | 0 |
| rdistefano | 1 | 0 | 0 | 1 |
| charlesfoster | 1 | 0 | 0 | 1 |
| GoncheDanesh | 1 | 0 | 0 | 1 |
| Eduardo-Auer | 1 | 0 | 0 | 0 |
| NCC-2310-Anna | 1 | 0 | 0 | 0 |
| schorlton-bugseq | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#152charlesfoster2026-03-25 04:24Tag a release?
- Issue comment#158andreas-wilm2026-02-04 10:13lofreq call ran into buffer overflow
- Issue comment#158andreas-wilm2026-02-04 09:16lofreq call ran into buffer overflow
- Issue comment#158andreas-wilm2026-02-04 06:25lofreq call ran into buffer overflow
- Issue#158NCC-2310-Anna2026-02-03 14:49lofreq call ran into buffer overflow
- Issue#154andreas-wilm2025-10-16 01:59Truncated VCF Header
- Pull request#155jchorl2025-08-27 18:48
- Issue#153YangJingqii2025-05-28 07:34Question about --no-default-filter being automatically applied in lofreq call-parallel
- Issue#152schorlton-bugseq2025-03-01 18:14Tag a release?
- Issue comment#151masterrite2025-02-27 03:50Indel filtering using default filter at the last step failed
- Issue#151masterrite2025-02-27 03:10Indel filtering using default filter at the last step failed
- Issue#150YangJingqii2025-01-10 07:22Unexpected Discrepancy in iSNV Detection Between Workflows With and Without Kraken2 Filtering
- Issue#148LiuH20202024-11-19 02:35How does LoFreq automatically adapt to changes in coverage?
- Issue#146antonkratz2024-11-14 01:26lowfreq "not available from current channels"
- Issue comment#146andreas-wilm2024-11-14 00:44lowfreq "not available from current channels"
- Issue#141Eduardo-Auer2024-10-27 19:10MGI T7 or T10 data
- Issue#145tanu062024-10-25 18:43Are there any suggested set of hard filters on lofreq indel file
- Issue comment#139balayev12023-10-27 18:22subprocess.CalledProcessError: non-zero exit status 1
- Issue#139balayev12023-10-27 18:22subprocess.CalledProcessError: non-zero exit status 1
- Issue comment#139andreas-wilm2023-10-19 23:44subprocess.CalledProcessError: non-zero exit status 1
- Issue comment#139balayev12023-10-19 19:50subprocess.CalledProcessError: non-zero exit status 1
- Issue comment#138mkadlof2023-10-19 05:50HTSLIB Variable
- Issue comment#140andreas-wilm2023-10-18 23:29IndexError: list index out of range
- Issue#138mkadlof2023-10-16 07:09HTSLIB Variable
- Issue comment#137balayev12023-10-13 20:14subprocess.CalledProcessError: non-zero exit status 1
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 6 stars here means stars gained during the window, not the repo's star count.