CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hierarchical organization and obtain sub-compartments; (3) compute nested sub-domains within each chromatin domain from short-range contacts.
active 2023-08-31 → 2026-07-23 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1058 days from 2023-08-31 to 2026-07-23. Pushes: 4 total, peak 2 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 13 total, peak 3 in a day. Comments: 26 total, peak 4 in a day. Stars: 15 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| YuanlongLiu | 18 | 2 | 0 | 12 |
| mdozmorov | 7 | 0 | 0 | 5 |
| zhengdafangyuan | 4 | 0 | 0 | 2 |
| Bennibraun | 3 | 0 | 0 | 1 |
| chenggang108 | 3 | 0 | 0 | 2 |
| Wan9299 | 2 | 0 | 0 | 1 |
| MartinLoza | 2 | 0 | 0 | 2 |
| MoreauK | 1 | 0 | 0 | 1 |
| lucananni93 | 1 | 1 | 0 | 0 |
| shimw6828 | 1 | 0 | 0 | 0 |
| GMFranceschini | 1 | 1 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#16mdozmorov2025-07-30 01:41NAs in compartment calls
- Issue#16mdozmorov2025-07-30 01:41NAs in compartment calls
- Issue comment#16mdozmorov2025-05-05 13:30NAs in compartment calls
- Issue comment#16YuanlongLiu2025-05-05 09:13NAs in compartment calls
- Issue comment#16mdozmorov2025-05-02 12:43NAs in compartment calls
- Issue comment#16YuanlongLiu2025-05-01 04:47NAs in compartment calls
- Issue comment#16mdozmorov2025-04-30 16:15NAs in compartment calls
- Issue comment#16YuanlongLiu2025-04-30 14:52NAs in compartment calls
- Issue comment#16mdozmorov2025-04-30 14:14NAs in compartment calls
- Issue#13YuanlongLiu2025-04-30 13:34A question about the output
- Issue#14YuanlongLiu2025-04-30 13:33File cannot be opened for reading
- Issue comment#14YuanlongLiu2025-04-30 13:33File cannot be opened for reading
- Issue#16mdozmorov2025-04-30 13:27NAs in compartment calls
- Issue#15shimw68282025-01-17 01:28sub-domains bed file can not use chrom with 'chr'
- Issue comment#1MartinLoza2024-02-05 23:17The execution fails when using .hic file as input
- Issue comment#1MartinLoza2024-02-05 12:24The execution fails when using .hic file as input
- Issue comment#12YuanlongLiu2023-12-24 09:53The R package of "maptools" is not available from 10,2023
- Issue comment#13chenggang1082023-12-14 00:14A question about the output
- Issue comment#13YuanlongLiu2023-12-07 14:17A question about the output
- Issue comment#13chenggang1082023-12-07 13:47A question about the output
- Issue comment#13YuanlongLiu2023-12-05 21:13A question about the output
- Issue#13chenggang1082023-12-05 17:57A question about the output
- Issue comment#12Wan92992023-11-23 14:30The R package of "maptools" is not available from 10,2023
- Issue#9YuanlongLiu2023-11-23 10:54normalizations other than KR
- Issue comment#12YuanlongLiu2023-11-23 10:54The R package of "maptools" is not available from 10,2023
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 15 stars here means stars gained during the window, not the repo's star count.