A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
active 2023-08-16 → 2026-06-16 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1036 days from 2023-08-16 to 2026-06-16. Pushes: 110 total, peak 9 in a day. Pull requests: 58 total, peak 6 in a day. Issues: 79 total, peak 3 in a day. Comments: 171 total, peak 11 in a day. Stars: 117 total, peak 5 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| marcovarrone | 252 | 91 | 44 | 89 |
| pre-commit-ci[bot] | 25 | 19 | 6 | 0 |
| LukasHats | 17 | 0 | 1 | 12 |
| milddaa | 10 | 0 | 0 | 6 |
| pakiessling | 8 | 0 | 0 | 5 |
| Zjianglin | 8 | 0 | 0 | 7 |
| TengyuZz | 8 | 0 | 0 | 5 |
| coderabbitai[bot] | 7 | 0 | 0 | 5 |
| josenimo | 6 | 0 | 0 | 5 |
| scverse-bot | 6 | 0 | 6 | 0 |
| HeesooSong | 5 | 0 | 0 | 4 |
| Feyapeng | 5 | 0 | 0 | 5 |
| codecov[bot] | 5 | 0 | 0 | 5 |
| zhengrongbin | 5 | 0 | 0 | 2 |
| ayumatsubo | 4 | 0 | 0 | 2 |
| CocoGzh | 4 | 0 | 0 | 3 |
| grst | 4 | 0 | 1 | 1 |
| RunyuXia | 3 | 0 | 0 | 1 |
| tj-20250423 | 3 | 0 | 0 | 1 |
| antonncheeseman | 2 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#114j-bac2026-03-15 09:19Error running on large dataset
- Issue#114j-bac2026-03-14 10:35Error running on large dataset
- Pull request#113marcovarrone2026-03-02 20:48
- Issue comment#108YszSoleil2026-02-28 13:31Error converting integer scalar during aggregate_neighbors
- Issue#107zhenhuapku2026-01-14 05:39Inquiry on Neighbor Graph Methods for 8 µm Bin Data in Visium HD
- Issue comment#105marcovarrone2025-10-20 06:31visium hd data compatible?
- Issue#102YanjunLiu22025-09-17 18:33Unable to run torchgmm.bayes.GaussianMixture using 2 gpus
- Issue comment#98Clement-zcj2025-08-13 10:07Question about handling multiple samples per Xenium slide
- Issue comment#98marcovarrone2025-08-13 07:51Question about handling multiple samples per Xenium slide
- Issue#98maidou-7772025-08-13 02:51Question about handling multiple samples per Xenium slide
- Pull request#97pre-commit-ci[bot]2025-08-11 16:56
- Issue comment#67drosop2025-07-19 01:12Single sample within group
- Releasemarcovarrone2025-06-27 11:30v0.3.5
- Issue comment#88marcovarrone2025-06-27 11:20Problem writing adata after performing diff_nhood_enrichment
- Issue comment#90marcovarrone2025-06-27 11:19Type Error in plotting cluster boundaries with cc.pl.boundaries
- Issue#88marcovarrone2025-06-27 11:08Problem writing adata after performing diff_nhood_enrichment
- Pull request#95marcovarrone2025-06-27 09:50
- Pull request#94marcovarrone2025-06-25 14:33
- Issue#93marcovarrone2025-06-25 14:17Boundaries and niche components colors are not synchronized
- Issue#90marcovarrone2025-06-24 11:59Type Error in plotting cluster boundaries with cc.pl.boundaries
- Pull request#92marcovarrone2025-06-24 11:45
- Pull request#91marcovarrone2025-06-24 10:14
- Pull request#83marcovarrone2025-06-24 08:26
- Pull request#66marcovarrone2025-06-24 08:12
- Issue#88zztin2025-05-08 20:19Writing adata after performing diff_nhood_enrichment
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 117 stars here means stars gained during the window, not the repo's star count.