Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
active 2025-06-11 → 2026-06-05 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 360 days from 2025-06-11 to 2026-06-05. Pushes: 26 total, peak 8 in a day. Pull requests: 11 total, peak 4 in a day. Issues: 7 total, peak 2 in a day. Comments: 10 total, peak 5 in a day. Stars: 2 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| RalfG | 44 | 26 | 10 | 3 |
| paretje | 5 | 0 | 0 | 5 |
| Copilot | 2 | 0 | 0 | 0 |
| levitsky | 2 | 0 | 1 | 1 |
| lliligabriel | 1 | 0 | 0 | 0 |
| codecov[bot] | 1 | 0 | 0 | 1 |
| likun1212 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#144RalfG2026-04-14 07:40`PSMList.__setitem__` should accept `np.ndarray` values
- Pull request#143RalfG2026-02-12 12:37
- Issue#142RalfG2026-02-12 12:36`io.pepxml`: PSM score cannot be inferred if first `spectrum_query` items is empty
- Pull request#141RalfG2025-12-22 15:47
- Pull request#141RalfG2025-12-22 15:46
- Issue#139lliligabriel2025-11-26 01:16sqlalchemy version incompatibility with ms2pip
- Issue comment#138levitsky2025-11-12 15:07Peptidoforms parsed from MaxQuant output are not always valid
- Issue comment#138RalfG2025-11-06 18:59Peptidoforms parsed from MaxQuant output are not always valid
- Issue#137RalfG2025-11-05 11:53Peptidoform properties: `TagBase` vs `ModificationBase`?
- Pull request#136RalfG2025-10-28 20:49
- Issue comment#135codecov[bot]2025-10-27 21:50Use uv in publish workflow
- Pull request#131RalfG2025-10-27 16:38
- Pull request#121RalfG2025-10-27 16:08
- Issue#127RalfG2025-10-27 10:43Cannot compute theoretical mass for non-natural residue Aib using [MOD:01001]
- Issue comment#127RalfG2025-10-27 10:43Cannot compute theoretical mass for non-natural residue Aib using [MOD:01001]
- Issue#123RalfG2025-10-27 10:10Fragpipe parser produces semantically invalid ProForma sequences
- Pull request#124RalfG2025-10-27 10:10
- Pull request#124RalfG2025-10-27 10:10
- Pull request#129RalfG2025-10-24 13:45
- Issue#127likun12122025-08-16 20:08Cannot compute theoretical mass for non-natural residue Aib using [MOD:01001]
- Pull request#126levitsky2025-08-15 13:46
- Pull request#125RalfG2025-06-11 16:03
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 2 stars here means stars gained during the window, not the repo's star count.