genome aligner based upon notion of Cactus graphs
active 2024-12-30 → 2026-08-10 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 589 days from 2024-12-30 to 2026-08-10. Pushes: 272 total, peak 11 in a day. Pull requests: 80 total, peak 4 in a day. Issues: 98 total, peak 3 in a day. Comments: 115 total, peak 5 in a day. Stars: 53 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| glennhickey | 378 | 258 | 74 | 39 |
| benedictpaten | 16 | 13 | 2 | 1 |
| bighawkin | 9 | 0 | 0 | 4 |
| helloworldABCD1234 | 6 | 0 | 0 | 0 |
| diego-rt | 6 | 0 | 0 | 5 |
| gabee-chan | 5 | 0 | 0 | 4 |
| aaannaw | 5 | 0 | 0 | 4 |
| zhangyehao | 4 | 0 | 0 | 2 |
| yaoxkkkkk | 4 | 0 | 0 | 4 |
| jiangguijie | 4 | 0 | 0 | 2 |
| bbimber | 4 | 0 | 0 | 3 |
| yeeus | 4 | 0 | 0 | 1 |
| Windyxia11 | 3 | 0 | 0 | 1 |
| kuangzhuoran | 3 | 0 | 0 | 2 |
| freshspaceoctopus | 3 | 0 | 0 | 1 |
| HY6Wu | 3 | 0 | 0 | 0 |
| metaphysicser | 3 | 0 | 0 | 1 |
| BlackSlipper | 3 | 0 | 0 | 1 |
| shuairun | 3 | 0 | 0 | 1 |
| wpfeiffer | 3 | 0 | 0 | 2 |
Recent activity
Latest issues, pull requests and releases
- Pull request#1978glennhickey2026-08-10 14:08
- Pull request#1950glennhickey2026-07-20 19:48
- Pull request#1876glennhickey2026-04-28 11:27
- Issue#1924foreignsand2026-04-23 08:02cactus-update-prepare add branch isn't updating the original hal file
- Issue comment#1917jwli-code2026-04-16 04:35clip_vg
- Issue#1918foreignsand2026-04-15 00:35Installation Issue: ERROR: Failed to build 'cigar' when getting requirements to build wheel
- Issue comment#1918glennhickey2026-04-14 18:12Installation Issue: ERROR: Failed to build 'cigar' when getting requirements to build wheel
- Issue comment#1912ldenti2026-04-03 16:57Free-disk space ratio seems to cause a crash
- Issue comment#1910ZhaoShuo03252026-04-03 12:30Empty VCF output and severe path fragmentation in GFA (Walk lines) using cactus-pangenome
- Pull request#1908glennhickey2026-03-12 17:13
- Issue comment#1902nicolasmalexandre2026-02-24 16:40Toil-work directory rerunning the same jobs iteratively
- Issue#1902nicolasmalexandre2026-02-23 23:20Toil-work directory rerunning the same jobs iteratively
- Issue comment#1897shin07272026-02-18 16:07cactus_sanitizeFastaHeaders fails: "Could not open input file" although Toil downloaded the fasta
- Issue comment#1898glennhickey2026-02-17 19:07How to restart an interrupted step-by-step task
- Issue comment#1891benedictpaten2026-02-11 01:23Parallelize paffy chain by splitting PAF by query contig
- Pull request#1892glennhickey2026-02-09 13:47
- Issue comment#15847JVST2026-02-05 07:37Requesting memory issue
- Issue comment#1890glennhickey2026-02-02 23:33cactus-hal2maf: are regions on different scaffolds considered dupes?
- Issue#1890gwct2026-02-02 21:22cactus-hal2maf: are regions on different scaffolds considered dupes?
- Pull request#1888glennhickey2026-02-01 20:53
- Pull request#1888glennhickey2026-02-01 20:53
- Releaseglennhickey2026-02-01 20:06
- Pull request#1887glennhickey2026-02-01 20:05
- Pull request#1885glennhickey2026-01-31 17:16
- Pull request#1885glennhickey2026-01-30 21:35
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 53 stars here means stars gained during the window, not the repo's star count.