Hierarchical Alignment Format
active 2024-04-07 → 2026-05-25 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 779 days from 2024-04-07 to 2026-05-25. Pushes: 10 total, peak 3 in a day. Pull requests: 4 total, peak 2 in a day. Issues: 10 total, peak 1 in a day. Comments: 17 total, peak 3 in a day. Stars: 15 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| glennhickey | 18 | 9 | 4 | 5 |
| sosie101 | 4 | 0 | 0 | 2 |
| bright-hu | 4 | 0 | 0 | 2 |
| diekhans | 2 | 1 | 0 | 1 |
| taoqxtaozi | 2 | 0 | 0 | 2 |
| liangminliu | 2 | 0 | 0 | 2 |
| osyafinkelberg | 2 | 0 | 0 | 1 |
| astarr97 | 1 | 0 | 0 | 0 |
| Marh32 | 1 | 0 | 0 | 1 |
| KabitaBaral1 | 1 | 0 | 0 | 0 |
| simone-says | 1 | 0 | 0 | 0 |
| shuiyanwu778 | 1 | 0 | 0 | 0 |
| YusenHou519 | 1 | 0 | 0 | 0 |
| ksenia-krasheninnikova | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#324glennhickey2025-12-09 00:07Underflow bug report in hal2fasta
- Pull request#325glennhickey2025-12-09 00:05
- Pull request#323glennhickey2025-09-09 17:33
- Issue#322KabitaBaral12025-07-08 00:17hal2fasta - how does it handle reverse strand information from bed file
- Issue comment#310glennhickey2025-06-02 14:09Compile in remote HAL access by default
- Issue comment#321sosie1012025-06-02 13:54halLiftover+halSynteny on alignment leads to short syntenic blocks
- Issue#321sosie1012025-06-02 13:54halLiftover+halSynteny on alignment leads to short syntenic blocks
- Issue comment#321sosie1012025-05-30 17:50halLiftover+halSynteny on alignment leads to short syntenic blocks
- Issue comment#321ksenia-krasheninnikova2025-05-29 13:57halLiftover+halSynteny on alignment leads to short syntenic blocks
- Issue#321sosie1012025-05-28 23:58halLiftover+halSynteny on alignment leads to short syntenic blocks
- Issue comment#283taoqxtaozi2025-05-18 14:41Small issue with halWriteNucleotides (?fix described)
- Issue comment#283taoqxtaozi2025-05-18 14:26Small issue with halWriteNucleotides (?fix described)
- Issue comment#320osyafinkelberg2025-04-27 13:31halLiftover silently skips reference genome positions for which there is no match in the target genome
- Issue#320osyafinkelberg2025-04-27 12:34halLiftover silently skips reference genome positions for which there is no match in the target genome
- Issue#316YusenHou5192025-01-22 03:46Guidance on Extracting Aligned Sequences for Parent and Child Triplets
- Issue#315astarr972025-01-17 00:25Efficiently getting all variants and branch on which they appeared
- Pull request#313glennhickey2024-12-30 18:33
- Pull request#313glennhickey2024-12-30 15:34
- Issue#312simone-says2024-12-22 19:23Cannot get output from halStats --allCoverage
- Issue comment#309liangminliu2024-11-01 05:36Build Error with HAL Using HDF5
- Issue comment#309glennhickey2024-10-31 12:38Build Error with HAL Using HDF5
- Issue comment#309diekhans2024-10-31 06:34Build Error with HAL Using HDF5
- Issue comment#309liangminliu2024-10-31 05:22Build Error with HAL Using HDF5
- Issue comment#308glennhickey2024-10-11 18:21GapDeletion
- Issue#308shuiyanwu7782024-10-11 06:47GapDeletion
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 15 stars here means stars gained during the window, not the repo's star count.