Skip to content

PROportions of Variants of Concern using counts, coverage, and a variant matrix.

active 2023-12-222024-12-17 (UTC)

Partial coverage20,657 / 26,304 hourly files (79%) · 2 absent upstream · 5,646 failed, retryable2023-08-152026-08-14 (UTC)— sampled evenly across the window, so rankings and trends hold; absolute counts scale up.
Events
171
Pushes
87
Pull requests
10
Issues
41
Stars
0
Forks
0

Activity over time

Daily event counts in the loaded window

Line chart, 362 days from 2023-12-22 to 2024-12-17. Pushes: 87 total, peak 10 in a day. Pull requests: 10 total, peak 2 in a day. Issues: 41 total, peak 10 in a day. Comments: 19 total, peak 5 in a day. Stars: 0 total, peak 0 in a day.

  • Pushes
  • Pull requests
  • Issues
  • Comments
  • Stars

Top contributors

Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity

ContributorContributionsPushesPRsComments
DBecker711157313
danerkestey332075
JeremyFaria131001

Recent activity

Latest issues, pull requests and releases

  • Issue comment#42DBecker72024-04-14 21:56
    Superfunction to run different model specs
  • Issue#51DBecker72024-04-14 21:45
    Plotting functions should return the data in a plot friendly format.
  • Issue comment#49DBecker72024-04-14 04:05
    `lineage_definition` class
  • Issue#49DBecker72024-04-14 04:05
    `lineage_definition` class
  • Issue comment#44DBecker72024-04-14 04:04
    Double check the mutations in `astronomize()`
  • Issue#44DBecker72024-04-14 04:04
    Double check the mutations in `astronomize()`
  • Issue#46DBecker72024-04-14 04:03
    Refactor to reasonable names (incl. "lineage" rather than "variant")
  • Issue comment#46DBecker72024-04-14 04:03
    Refactor to reasonable names (incl. "lineage" rather than "variant")
  • Issue#48DBecker72024-04-14 04:03
    Visualize `lineage_def` matrix (and pairwise matrix visualization)
  • Issue comment#48DBecker72024-04-14 04:03
    Visualize `lineage_def` matrix (and pairwise matrix visualization)
  • Issue#50DBecker72024-04-12 20:31
    Don't fail if one sample fails
  • Issue comment#48DBecker72024-04-12 20:27
    Visualize `lineage_def` matrix (and pairwise matrix visualization)
  • Issue comment#48DBecker72024-04-12 20:23
    Visualize `lineage_def` matrix (and pairwise matrix visualization)
  • Issue#44DBecker72024-04-09 02:54
    Double check the mutations in `astronomize()`
  • Pull request#41danerkestey2024-03-30 10:49
  • Issue comment#37DBecker72024-03-28 02:30
    Bootstrapping fully implemented
  • Issue#37DBecker72024-03-28 02:30
    Bootstrapping fully implemented
  • Issue#28DBecker72024-03-28 01:06
    Update all documentation to match current main branch implementation
  • Pull request#39DBecker72024-03-28 01:06
  • Pull request#39danerkestey2024-03-26 07:57
  • Pull request#38danerkestey2024-03-26 07:14
  • Issue#27JeremyFaria2024-03-25 23:48
    mutation_col should check rows as well
  • Issue#29DBecker72024-03-24 14:39
    `plot.provoc()` function
  • Issue#30DBecker72024-03-24 14:39
    `autoplot.provoc()` function
  • Pull request#36danerkestey2024-03-24 11:09

Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.