Benchmarking DNA Language Models on Biologically Meaningful Tasks
active 2025-05-06 → 2025-07-17 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 75 days from 2025-05-06 to 2025-07-22. Pushes: 45 total, peak 5 in a day. Pull requests: 5 total, peak 2 in a day. Issues: 21 total, peak 12 in a day. Comments: 0 total, peak 0 in a day. Stars: 0 total, peak 0 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| DavideGrecoGit | 68 | 42 | 5 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#16DavideGrecoGit2025-06-20 14:01
- Issue#15DavideGrecoGit2025-06-09 10:49[BUG] Not enough shared memory
- Issue#15DavideGrecoGit2025-06-09 10:48[BUG] Not enough shared memory
- Issue#14DavideGrecoGit2025-06-05 14:52[BUG] Cannot use more tan one GPU
- Issue#13DavideGrecoGit2025-06-04 12:55[FEAT] Train on the fly for the CpG Methylation and Histone Annotation tasks
- Issue#11DavideGrecoGit2025-06-04 10:52[FEAT] Supervised task model training on the fly
- Pull request#10DavideGrecoGit2025-05-22 14:55
- Pull request#10DavideGrecoGit2025-05-22 14:55
- Issue#4DavideGrecoGit2025-05-22 14:53[TASK] Run variant effects on HyenaDNA
- Issue#1DavideGrecoGit2025-05-22 14:53[BUG] Variant effects data naming is incorrect
- Issue#9DavideGrecoGit2025-05-08 12:50[FEAT] Implement dataloader for embeddings
- Issue#7DavideGrecoGit2025-05-08 12:50Run locally on subsample of data
- Issue#8DavideGrecoGit2025-05-08 12:49Run on cluster with entire dataset
- Issue#8DavideGrecoGit2025-05-08 12:49Run on cluster with entire dataset
- Issue#7DavideGrecoGit2025-05-08 09:00Run locally on subsample of data
- Issue#7DavideGrecoGit2025-05-08 08:59Run locally on subsample of data
- Issue#8DavideGrecoGit2025-05-08 08:54Run on cluster with entire dataset
- Issue#7DavideGrecoGit2025-05-08 08:53Run locally on subsample of data
- Issue#6DavideGrecoGit2025-05-08 08:51[TASK] Run variant effects on NucleotideTranformer
- Issue#5DavideGrecoGit2025-05-08 08:50[TASK] Run variant effects on DNABERT2
- Issue#4DavideGrecoGit2025-05-08 08:48[TASK] Run variant effects on HyenaDNA
- Issue#2DavideGrecoGit2025-05-08 08:47[FEAT] Variant effects (disease and expression) EDA
- Pull request#3DavideGrecoGit2025-05-07 11:01
- Pull request#3DavideGrecoGit2025-05-07 11:00
- Issue#2DavideGrecoGit2025-05-06 14:39[FEAT] Variant effects (disease and expression) EDA
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.