Spatial transcriptomics analyses and decoding in R
active 2023-08-19 → 2026-07-08 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1055 days from 2023-08-19 to 2026-07-08. Pushes: 20 total, peak 3 in a day. Pull requests: 5 total, peak 2 in a day. Issues: 55 total, peak 5 in a day. Comments: 55 total, peak 5 in a day. Stars: 15 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| ningbioinfo | 82 | 20 | 3 | 31 |
| vmkalbskopf | 5 | 0 | 0 | 5 |
| hookoop | 4 | 0 | 0 | 3 |
| kav-ita | 4 | 0 | 0 | 2 |
| bharatm26 | 3 | 0 | 0 | 1 |
| iddryg | 3 | 0 | 0 | 1 |
| pcantalupo | 3 | 0 | 1 | 2 |
| willros | 3 | 0 | 0 | 2 |
| dkcoxie | 3 | 0 | 1 | 1 |
| bl24 | 2 | 0 | 0 | 1 |
| jheonsuh | 2 | 0 | 0 | 0 |
| ErickMUO | 2 | 0 | 0 | 1 |
| OnkarMulay | 2 | 0 | 0 | 1 |
| jiangzh-coder | 1 | 0 | 0 | 0 |
| bkinnersley | 1 | 0 | 0 | 0 |
| Anjaney10 | 1 | 0 | 0 | 1 |
| emiliasiukola | 1 | 0 | 0 | 0 |
| stevensalvini | 1 | 0 | 0 | 1 |
| ZoeGerber | 1 | 0 | 0 | 0 |
| ChelseaCHENX | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#31Anjaney102025-11-25 10:07SpatialDecon using readGeoMx
- Issue comment#48stevensalvini2025-10-23 06:54Constructing the countFile from imported dcc files.
- Pull request#52pcantalupo2025-09-17 14:42
- Issue#45ningbioinfo2025-09-17 04:18Advice for design matrix
- Issue#47ningbioinfo2025-09-17 04:18GeoMx DSP WTA data: QC and edgeR vs limma-voom
- Issue comment#51ningbioinfo2025-09-17 04:18findNCGs puts the first 500 alphabetically sorted genes in the spe object metadata as the NCGs
- Issue comment#51pcantalupo2025-09-12 16:15findNCGs puts the first 500 alphabetically sorted genes in the spe object metadata as the NCGs
- Issue comment#51pcantalupo2025-09-11 18:43findNCGs puts the first 500 alphabetically sorted genes in the spe object metadata as the NCGs
- Issue#50Alexis-Varin2025-09-11 16:24Analysis of publicly available GEO datasets with missing Annotation file
- Issue#49nickhsmith2025-08-27 23:58DSP Protein Analyses [discussion]
- Issue comment#28kav-ita2025-08-05 02:27readGeoMx error in rowNames
- Issue comment#18vmkalbskopf2025-08-01 07:33Error in readGeoMx qith rmNegProbe = FALSE
- Issue comment#18ningbioinfo2025-07-31 23:53Error in readGeoMx qith rmNegProbe = FALSE
- Issue#42ningbioinfo2025-07-31 23:47NegProbe in Spatial Deconvolution
- Issue#43ningbioinfo2025-07-31 23:46GeoMX protein data
- Issue#44ningbioinfo2025-07-31 23:46Assay selection error within multiple functions
- Issue comment#45ningbioinfo2025-07-31 23:46Advice for design matrix
- Issue comment#46ningbioinfo2025-07-31 23:38Combining segmented ROIs into single ROI
- Issue comment#18vmkalbskopf2025-07-31 07:05Error in readGeoMx qith rmNegProbe = FALSE
- Issue comment#37vmkalbskopf2025-07-30 10:14`readGeoMx` Input from GeoMx NGS Pipeline
- Issue comment#18vmkalbskopf2025-07-30 08:59Error in readGeoMx qith rmNegProbe = FALSE
- Issue comment#28vmkalbskopf2025-07-30 08:43readGeoMx error in rowNames
- Issue comment#47ningbioinfo2025-07-01 04:33GeoMx DSP WTA data: QC and edgeR vs limma-voom
- Issue#47JoanCG2025-02-11 16:09GeoMx DSP WTA data: QC and edgeR vs limma-voom
- Issue#46bkinnersley2024-12-12 14:33Combining segmented ROIs into single ROI
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 15 stars here means stars gained during the window, not the repo's star count.