Hybrid error correction of long reads using colored de Bruijn graphs
active 2023-08-15 → 2025-12-30 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 869 days from 2023-08-15 to 2025-12-30. Pushes: 2 total, peak 1 in a day. Pull requests: 2 total, peak 1 in a day. Issues: 16 total, peak 2 in a day. Comments: 23 total, peak 4 in a day. Stars: 28 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| GuillaumeHolley | 16 | 2 | 1 | 10 |
| Chullcrew | 5 | 0 | 0 | 3 |
| cahuparo | 4 | 0 | 0 | 2 |
| mbcarbonetto | 4 | 0 | 0 | 2 |
| SimonHegele | 3 | 0 | 0 | 2 |
| juyanmei | 2 | 0 | 0 | 1 |
| bricoletc | 2 | 0 | 1 | 1 |
| dukecomeback | 2 | 0 | 0 | 1 |
| Alteroldis | 2 | 0 | 0 | 0 |
| SAMtoBAM | 1 | 0 | 0 | 0 |
| andyjslee | 1 | 0 | 0 | 0 |
| romantico727 | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#61Alteroldis2025-09-02 15:30Q: Using pipe as input for short read
- Issue comment#60romantico7272025-09-01 19:02Compilation error: assignment of read-only variable 'isEmpty'
- Issue#60Alteroldis2025-09-01 19:01Compilation error: assignment of read-only variable 'isEmpty'
- Issue comment#57dukecomeback2025-05-14 01:11should I use longer --k1 and --k2 in where I want to correct ONT with HiFi?
- Issue comment#57GuillaumeHolley2025-04-28 13:54should I use longer --k1 and --k2 in where I want to correct ONT with HiFi?
- Issue comment#58GuillaumeHolley2025-04-28 13:42-a parameter with PacBio Hifi
- Issue#58GuillaumeHolley2025-04-28 13:42-a parameter with PacBio Hifi
- Issue#58SAMtoBAM2025-04-21 17:48-a parameter with PacBio Hifi
- Issue#57dukecomeback2025-04-10 10:10should I use longer --k1 and --k2 in case where I want to correct ONT with HiFi?
- Issue comment#56mbcarbonetto2025-03-11 11:12duplicated reads in output
- Issue#56mbcarbonetto2025-02-28 14:29duplicated reads in output
- Issue comment#54GuillaumeHolley2024-11-20 15:10Using Ratatosk to error-correct long-read RNA sequencing data
- Issue comment#54GuillaumeHolley2024-11-20 13:11Using Ratatosk to error-correct long-read RNA sequencing data
- Issue comment#54SimonHegele2024-11-20 12:07Using Ratatosk to error-correct long-read RNA sequencing data
- Issue#55SimonHegele2024-11-08 21:56Input reads not recognised
- Issue comment#55SimonHegele2024-11-08 21:56Input reads not recognised
- Issue#54andyjslee2024-10-25 19:51Using Ratatosk to error-correct long-read RNA sequencing data
- Issue#52Chullcrew2024-09-12 18:59Parallel thread segmentation fault
- Issue comment#52Chullcrew2024-09-12 18:57Parallel thread segmentation fault
- Issue comment#52Chullcrew2024-09-10 19:08Parallel thread segmentation fault
- Issue comment#53GuillaumeHolley2024-09-10 15:45Ratatosk correct with data from several individuals
- Issue#53GuillaumeHolley2024-09-10 15:45Ratatosk correct with data from several individuals
- Issue comment#53mbcarbonetto2024-09-10 15:01Ratatosk correct with data from several individuals
- Issue comment#53GuillaumeHolley2024-09-09 15:52Ratatosk correct with data from several individuals
- Issue comment#52GuillaumeHolley2024-09-09 15:25Parallel thread segmentation fault
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 28 stars here means stars gained during the window, not the repo's star count.