Multi-modal single cell analysis pipelines
active 2023-08-15 → 2025-12-26 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 865 days from 2023-08-15 to 2025-12-26. Pushes: 1,063 total, peak 37 in a day. Pull requests: 305 total, peak 12 in a day. Issues: 188 total, peak 13 in a day. Comments: 270 total, peak 13 in a day. Stars: 45 total, peak 5 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| bio-la | 964 | 453 | 166 | 125 |
| SarahOuologuem | 306 | 260 | 18 | 16 |
| giuliaelgarcia | 171 | 131 | 28 | 3 |
| deevdevil88 | 163 | 29 | 23 | 48 |
| crichgriffin | 129 | 55 | 34 | 17 |
| kevinrue | 112 | 78 | 6 | 20 |
| Lilly-May | 78 | 43 | 10 | 13 |
| wlason | 47 | 6 | 9 | 12 |
| Zethson | 32 | 6 | 7 | 9 |
| JarneBelien | 7 | 0 | 1 | 1 |
| olivermccallion | 5 | 0 | 0 | 3 |
| mgrantpeters | 4 | 0 | 0 | 1 |
| Yohana-Berhe | 4 | 0 | 0 | 0 |
| JHYSiu | 3 | 0 | 0 | 0 |
| liuchuan111 | 2 | 0 | 0 | 1 |
| AhmadAlalti | 2 | 1 | 1 | 0 |
| andrewkcleeuc | 2 | 0 | 0 | 1 |
| canergen | 1 | 0 | 0 | 0 |
| Elllene | 1 | 0 | 0 | 0 |
| viktorzou | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#344AhmadAlalti2025-12-11 10:07
- Issue#104JHYSiu2025-08-13 13:16AttributeError: 'YTick' object has no attribute 'label'
- Pull request#337deevdevil882025-07-18 10:17
- Pull request#334bio-la2025-07-09 07:59
- Issue#335Zethson2025-07-06 21:51Remove support for louvain clustering
- Pull request#334Zethson2025-07-06 21:50
- Pull request#332deevdevil882025-06-30 10:10
- Pull request#332deevdevil882025-06-25 19:03
- Issue comment#331bio-la2025-06-24 18:33Ingest ends in error
- Issue comment#331deevdevil882025-06-24 18:17Ingest ends in error
- Issue#331aryaghate2025-06-24 18:15Ingest ends in error
- Releasebio-la2025-04-23 07:25from MuData to SpatialData
- Pull request#319bio-la2025-04-23 07:22
- Pull request#323bio-la2025-03-26 09:29
- Issue comment#330wlason2025-02-10 17:05Adding cell-volume size factor normalisation for spatial
- Issue#330wlason2025-02-10 16:37Adding cell-volume size factor normalisation for spatial
- Issue comment#329bio-la2025-02-07 14:39Plotting multiple spatial slides
- Issue#329wlason2025-02-07 14:21Plotting multiple spatial slides
- Pull request#328vadimnazarov2025-02-04 20:41
- Issue comment#326bio-la2025-01-29 08:37Documentation link missing
- Issue#214bio-la2025-01-29 08:35500,000 nuclei of multiome data has very high memory requirements for batch correction (1.2 TB)
- Pull request#327bio-la2025-01-29 08:34
- Pull request#327bio-la2025-01-29 08:33
- Issue#326viktorzou2025-01-16 18:58Documentation link missing
- Issue comment#325bio-la2025-01-15 08:24Challenges in Using Panpipes for Single-Cell Multiomics Data Analysis
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 45 stars here means stars gained during the window, not the repo's star count.