Tools for working with OrthoXML files.
active 2025-05-22 → 2026-08-03 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 439 days from 2025-05-22 to 2026-08-03. Pushes: 58 total, peak 9 in a day. Pull requests: 13 total, peak 3 in a day. Issues: 16 total, peak 3 in a day. Comments: 10 total, peak 2 in a day. Stars: 2 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| ali-yz | 66 | 46 | 10 | 5 |
| alpae | 10 | 4 | 3 | 1 |
| sinamajidian | 9 | 2 | 0 | 3 |
| nromashchenko | 6 | 2 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#38ali-yz2026-05-02 21:46unnecessary print of ortho-pairs as stdout
- Issue comment#42sinamajidian2026-02-13 14:49AttributeError: 'NoneType' object has no attribute 'remove'
- Issue#39sinamajidian2025-12-30 14:56feature-request: report orthology type 1-to-1 or 1-to-many
- Issue#39sinamajidian2025-12-30 14:56feature-request: report orthology type 1-to-1 or 1-to-many
- Issue#38sinamajidian2025-12-30 14:54unnecessary print of ortho-pairs as stdout
- Issue comment#37sinamajidian2025-12-30 14:25Conflict in dendropy version between FastOMA and orthoxml-tools
- Issue comment#37ali-yz2025-12-30 14:15Conflict in dendropy version between FastOMA and orthoxml-tools
- Issue#35ali-yz2025-11-29 20:05from nhx to support loading taxonomy as orthoxml 0.5 standard
- Issue#35ali-yz2025-11-29 20:05from nhx to support loading taxonomy as orthoxml 0.5 standard
- Issue#34sinamajidian2025-11-24 16:55example NHX with duplication
- Pull request#31ali-yz2025-08-13 17:27
- Pull request#31ali-yz2025-08-13 17:26
- Pull request#30alpae2025-08-08 15:02
- Pull request#28alpae2025-08-08 14:47
- Issue comment#28alpae2025-08-08 14:17run cli-test during gh-action test
- Issue#23alpae2025-08-07 16:55orthoxml written by from-nhx are not valid
- Issue#25alpae2025-08-07 16:53from-nhx should allow to load species from nhx
- Pull request#24alpae2025-08-07 16:07
- Issue#4ali-yz2025-07-28 18:50Orthoxml-tools are memory-hungry
- Pull request#19ali-yz2025-07-28 18:07
- Pull request#20ali-yz2025-07-28 17:53
- Pull request#20ali-yz2025-07-28 17:51
- Pull request#17ali-yz2025-07-25 18:00
- Pull request#17ali-yz2025-07-25 17:58
- Issue#16nromashchenko2025-07-24 14:47Parser crash when used with .gz files
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 2 stars here means stars gained during the window, not the repo's star count.