a tool for inferring species tree from sequencing reads
active 2024-03-22 → 2026-05-12 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 782 days from 2024-03-22 to 2026-05-12. Pushes: 32 total, peak 8 in a day. Pull requests: 8 total, peak 3 in a day. Issues: 11 total, peak 2 in a day. Comments: 22 total, peak 3 in a day. Stars: 21 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| sinamajidian | 48 | 32 | 6 | 10 |
| alpae | 6 | 0 | 0 | 4 |
| nikostr | 2 | 0 | 0 | 0 |
| mathildeparis | 2 | 0 | 0 | 1 |
| pengyan19 | 2 | 0 | 0 | 1 |
| chalco777 | 2 | 0 | 2 | 0 |
| evo-eco-gen | 2 | 0 | 0 | 2 |
| combosch | 1 | 0 | 0 | 1 |
| ppat818 | 1 | 0 | 0 | 0 |
| YuWang07 | 1 | 0 | 0 | 0 |
| Tantoluwa | 1 | 0 | 0 | 0 |
| hansenwang123 | 1 | 0 | 0 | 1 |
| brutal588 | 1 | 0 | 0 | 0 |
| cyxiang1027 | 1 | 0 | 0 | 0 |
| nromashchenko | 1 | 0 | 0 | 1 |
| scuadros28 | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#80nromashchenko2025-11-12 15:03Can't process whitespaces in the read filenames
- Issue comment#79mathildeparis2025-10-27 14:28reat2tree run seems to go well but species not added to the tree.
- Issue comment#79sinamajidian2025-10-27 12:58reat2tree run seems to go well but species not added to the tree.
- Issue#79mathildeparis2025-10-27 12:48reat2tree run seems to go well but species not added to the tree.
- Issue#73nikostr2025-09-24 07:56Versions and git tags
- Releasesinamajidian2025-09-23 17:42v2.0.1
- Pull request#78sinamajidian2025-09-23 16:41
- Issue comment#77sinamajidian2025-09-23 03:19fix typo
- Pull request#76sinamajidian2025-09-22 19:48
- Pull request#76sinamajidian2025-09-22 19:46
- Pull request#74sinamajidian2025-09-22 14:40
- Issue#73nikostr2025-09-05 13:11Versions and git tags
- Pull request#72sinamajidian2025-09-02 18:31
- Issue comment#72sinamajidian2025-09-01 21:49Commented unnecesary import of pyham
- Issue comment#71sinamajidian2025-09-01 21:46Metagenomics: Logging cleanup and redirection to stdout, drop unused pyham import
- Pull request#71chalco7772025-09-01 21:10
- Pull request#70sinamajidian2025-08-11 18:45
- Issue comment#69sinamajidian2025-08-04 22:08Edited --read_type to accept any minimap2 command-line option
- Pull request#69chalco7772025-08-04 21:58
- Issue comment#68sinamajidian2025-07-15 13:54OMA
- Issue#68cyxiang10272025-07-15 02:39OMA
- Issue comment#60hansenwang1232024-10-19 06:51TypeError: cannot unpack non-iterable NoneType object
- Issue comment#62alpae2024-10-16 06:34IndexError: tuple index out of range
- Issue#63alpae2024-10-16 06:32Question: What is the question mark in the amoni acid sequence?
- Issue comment#63alpae2024-10-16 06:32Question: What is the question mark in the amoni acid sequence?
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 21 stars here means stars gained during the window, not the repo's star count.