Fast HLA type inference from whole-genome data
active 2023-08-15 → 2026-04-08 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 968 days from 2023-08-15 to 2026-04-08. Pushes: 7 total, peak 2 in a day. Pull requests: 3 total, peak 1 in a day. Issues: 41 total, peak 2 in a day. Comments: 32 total, peak 7 in a day. Stars: 39 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| AlexanderDilthey | 19 | 7 | 0 | 10 |
| LouisLeNezet | 6 | 0 | 0 | 2 |
| serge2016 | 5 | 0 | 0 | 5 |
| bsb2014 | 5 | 0 | 0 | 1 |
| lidd77 | 5 | 0 | 0 | 2 |
| bioinfomatio | 4 | 0 | 0 | 1 |
| pablosoro | 3 | 0 | 0 | 1 |
| scontente | 3 | 0 | 0 | 1 |
| anoronh4 | 3 | 0 | 0 | 1 |
| mayalevy | 3 | 0 | 1 | 1 |
| kevinpryan | 2 | 0 | 0 | 1 |
| dansteiert | 2 | 0 | 0 | 0 |
| suhrig | 2 | 0 | 2 | 0 |
| yuzhuxuyang | 1 | 0 | 0 | 0 |
| RahulKumar-genotypic | 1 | 0 | 0 | 0 |
| kristineding98 | 1 | 0 | 0 | 0 |
| heweihuang | 1 | 0 | 0 | 1 |
| kiranfranklin999 | 1 | 0 | 0 | 1 |
| brianp9397 | 1 | 0 | 0 | 0 |
| beichengao | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#140kevinpryan2026-04-08 14:57Link to PRG_MHC_GRCh38_withIMGT.tar.gz data package is unstable
- Issue comment#140kevinpryan2026-04-08 14:57Link to PRG_MHC_GRCh38_withIMGT.tar.gz data package is unstable
- Issue#138lgozz2026-01-27 11:16No compatible reference specifications - GRCh38
- Issue#137Anastasiabum2025-11-05 16:27Fast mode error on test dataset NA12878.mini.cram (version 1.0.8-fast)
- Issue#135mirgin012025-09-25 12:05Error with test data?
- Issue#134RahulKumar-genotypic2025-08-22 10:07Error Running HLA-LA
- Issue comment#15Theo6122025-05-19 17:23only for GRCh38? not Hg19?
- Issue comment#121mayalevy2025-05-08 11:49Integrating new Long-Read Mode into HLA-LA
- Issue#133dyfyf2025-04-23 06:57Compatibility of CHM13v2.0-aligned BAM with --graph PRG_MHC_GRCh38_withIMGT in HLA*LA
- Issue comment#131LouisLeNezet2025-04-12 12:04Empty fastq with custom reference file
- Issue#131LouisLeNezet2025-04-12 12:04Empty fastq with custom reference file
- Issue comment#132LouisLeNezet2025-04-11 17:30Bam file with no unmapped reads
- Issue#132LouisLeNezet2025-04-11 17:30Bam file with no unmapped reads
- Issue#132LouisLeNezet2025-04-11 17:03Bam file with no unmapped reads
- Issue comment#125heweihuang2025-04-01 10:38bioconda installation issue: java.lang.UnsupportedClassVersionError
- Issue#131LouisLeNezet2025-03-28 16:25Empty fastq with custom reference file
- Issue#130anoronh42025-03-27 22:06conda installation: HLA-LA not in $PATH
- Issue comment#117anoronh42025-03-24 15:44only for GRCh38? not Hg19?
- Issue comment#129scontente2025-03-15 21:49How to create a reference with updated IMGT information?
- Issue comment#129serge20162025-03-15 20:57How to create a reference with updated IMGT information?
- Issue comment#129serge20162025-03-15 20:56How to create a reference with updated IMGT information?
- Issue#129scontente2025-03-14 20:52How to create a reference with updated IMGT information?
- Issue#128reshu232025-03-11 05:49Problem with ONT data
- Issue comment#127deve1052025-03-06 04:00No compatible reference specifications
- Issue#127brianp93972025-02-21 04:23No compatible reference specifications
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 39 stars here means stars gained during the window, not the repo's star count.