Enables interacting with EIT Pathogena via a command line interface. With the ability to run human read removal on FastQ files prior to upload, direct uploading to EIT Pathogena, as well as interacting with existing batches by downloading output files or checking run statuses
active 2024-10-23 → 2025-10-08 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 351 days from 2024-10-23 to 2025-10-08. Pushes: 57 total, peak 10 in a day. Pull requests: 31 total, peak 4 in a day. Issues: 0 total, peak 0 in a day. Comments: 32 total, peak 13 in a day. Stars: 1 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| jackalexanderhippo | 45 | 11 | 3 | 20 |
| kgoktas | 31 | 12 | 10 | 2 |
| MVerdonEIT | 20 | 8 | 7 | 2 |
| DomDuxbury | 18 | 13 | 3 | 1 |
| KingMichaelPark | 11 | 5 | 1 | 3 |
| sarahmapp | 10 | 3 | 2 | 2 |
| JDhillonEIT | 6 | 4 | 1 | 1 |
| mluker-eit | 2 | 0 | 1 | 0 |
| JeremyWesthead | 2 | 0 | 0 | 0 |
| dwells-eit | 1 | 0 | 0 | 1 |
| vickybirtleshippo | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#69sarahmapp2025-10-08 09:46
- Pull request#68mluker-eit2025-08-19 09:33
- Pull request#67MVerdonEIT2025-08-18 16:26
- Pull request#65MVerdonEIT2025-07-30 15:44
- Pull request#60DomDuxbury2025-07-28 09:17
- Pull request#63KingMichaelPark2025-07-24 15:42
- Pull request#64KingMichaelPark2025-07-23 16:21
- Pull request#64KingMichaelPark2025-07-23 13:52
- Pull request#62KingMichaelPark2025-07-17 12:16
- Pull request#61sarahmapp2025-07-16 10:53
- Pull request#45DomDuxbury2025-07-08 13:58
- Pull request#57kgoktas2025-07-07 09:21
- Pull request#57kgoktas2025-07-03 11:02
- Pull request#56kgoktas2025-07-03 10:16
- Issue comment#52jackalexanderhippo2025-07-03 09:02EV-2139: Add tests for mappings file and batch uploads
- Pull request#54kgoktas2025-06-27 15:36
- Pull request#51kgoktas2025-06-23 13:33
- Pull request#50kgoktas2025-06-23 13:30
- Pull request#50kgoktas2025-06-23 12:28
- Pull request#48kgoktas2025-06-20 13:50
- Pull request#45DomDuxbury2025-06-19 09:04
- Pull request#44MVerdonEIT2025-06-18 10:04
- Pull request#43MVerdonEIT2025-06-18 09:55
- Pull request#43MVerdonEIT2025-06-18 08:22
- Pull request#41kgoktas2025-06-18 07:49
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 1 stars here means stars gained during the window, not the repo's star count.