Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
active 2024-02-23 → 2026-04-22 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 790 days from 2024-02-23 to 2026-04-22. Pushes: 4 total, peak 2 in a day. Pull requests: 4 total, peak 4 in a day. Issues: 18 total, peak 1 in a day. Comments: 23 total, peak 3 in a day. Stars: 49 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| donovan-h-parks | 18 | 4 | 4 | 7 |
| priscalim00 | 3 | 0 | 0 | 1 |
| KendallGodwin | 3 | 0 | 0 | 2 |
| kritical1326 | 2 | 0 | 0 | 0 |
| ZING-ZMJ | 2 | 0 | 0 | 2 |
| cuongngh | 2 | 0 | 0 | 2 |
| yqy6611 | 2 | 0 | 0 | 0 |
| Footboard5358 | 2 | 0 | 0 | 1 |
| Sayyed-Hammad-Ullah-BS-Zoology-Student | 1 | 0 | 0 | 1 |
| mv-mendes | 1 | 0 | 0 | 0 |
| ZhaosuSong | 1 | 0 | 0 | 0 |
| azat-badretdin | 1 | 0 | 0 | 1 |
| liuyun313 | 1 | 0 | 0 | 0 |
| handibles | 1 | 0 | 0 | 0 |
| Sunflower-212 | 1 | 0 | 0 | 0 |
| raquellewei | 1 | 0 | 0 | 0 |
| jolespin | 1 | 0 | 0 | 1 |
| MatS792 | 1 | 0 | 0 | 1 |
| george-coulouris | 1 | 0 | 0 | 1 |
| StickHu | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#403donovan-h-parks2026-03-02 15:53bioconda release broken due to setuptools not being shipped with python 3.12 anymore
- Issue comment#403donovan-h-parks2026-03-02 15:53bioconda release broken due to setuptools not being shipped with python 3.12 anymore
- Issue#416KendallGodwin2026-01-07 07:16Prodigal Exit Code 34304 (CheckM v. 1.2.3)
- Issue comment#416KendallGodwin2026-01-07 07:16Prodigal Exit Code 34304 (CheckM v. 1.2.3)
- Issue comment#416donovan-h-parks2026-01-03 21:59Prodigal Exit Code 34304 (CheckM v. 1.2.3)
- Issue comment#416KendallGodwin2026-01-03 05:05Prodigal Exit Code 34304 (CheckM v. 1.2.3)
- Issue comment#414YanjieZhu19972025-12-18 11:27ERROR: Path to the CheckM reference data must be specified when running DREP
- Issue#411Footboard53582025-11-09 09:43pplacer exited with code: 35072
- Issue comment#411Footboard53582025-11-09 09:43pplacer exited with code: 35072
- Issue#415raquellewei2025-11-04 01:24Missing global import for pysam in coverage.py causes NameError
- Issue#414ZhaosuSong2025-09-20 14:00ERROR: Path to the CheckM reference data must be specified when running DREP
- Releasedonovan-h-parks2025-06-12 23:35v1.2.4
- Issue#372donovan-h-parks2025-06-12 23:17FileNotFoundError: [Errno 2] No such file or directory: 'checkm_folder/storage/tree/concatenated.tre'
- Issue comment#411donovan-h-parks2025-06-12 23:16pplacer exited with code: 35072
- Issue comment#376donovan-h-parks2025-06-12 23:14added the dockerfile for checkm
- Pull request#376donovan-h-parks2025-06-12 23:14
- Pull request#412donovan-h-parks2025-06-12 23:13
- Pull request#412donovan-h-parks2025-06-12 23:12
- Issue comment#412donovan-h-parks2025-06-12 23:11Fix: Allow Prodigal option '-p meta' by not exiting on first failure
- Pull request#412donovan-h-parks2025-06-12 23:11
- Issue comment#406zhaolei61162024-12-04 06:52what is genome bin for software checkM input
- Issue#404liangchengbo2024-11-03 06:27A error when assess MAGs
- Issue comment#272ZING-ZMJ2024-10-15 07:54ERROR: Models must be parsed before identifying HMM hits.
- Issue comment#272ZING-ZMJ2024-10-15 07:53ERROR: Models must be parsed before identifying HMM hits.
- Issue comment#272cuongngh2024-10-04 06:04ERROR: Models must be parsed before identifying HMM hits.
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 49 stars here means stars gained during the window, not the repo's star count.