Sequence analysis library used by Eddy/Rivas lab code
active 2023-08-15 → 2026-07-15 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1066 days from 2023-08-15 to 2026-07-15. Pushes: 62 total, peak 4 in a day. Pull requests: 7 total, peak 2 in a day. Issues: 10 total, peak 2 in a day. Comments: 30 total, peak 10 in a day. Stars: 10 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| cryptogenomicon | 74 | 55 | 4 | 14 |
| npcarter | 10 | 6 | 1 | 3 |
| permia | 6 | 0 | 0 | 2 |
| VimaxXAAS | 6 | 0 | 0 | 5 |
| althonos | 4 | 0 | 1 | 1 |
| Augustin-Zidek | 4 | 0 | 0 | 4 |
| 000generic | 2 | 0 | 0 | 1 |
| mr-c | 1 | 0 | 1 | 0 |
| rmhubley | 1 | 0 | 0 | 0 |
| nawrockie | 1 | 1 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#29cryptogenomicon2026-05-30 20:59Prepend sequence index if names non-unique in aligned fasta format
- Issue comment#76cryptogenomicon2026-05-29 22:22esl-shuffle silently fails to shuffle large sequences
- Issue comment#80althonos2025-05-30 15:19`esl_sq_CreateFrom` does not NULL-initialize `abc`
- Issue#80althonos2025-05-30 15:19`esl_sq_CreateFrom` does not NULL-initialize `abc`
- Issue#80althonos2025-05-08 13:49`esl_sq_CreateFrom` does not NULL-initialize `abc`
- Issue#79permia2025-03-17 01:13what is 'nmatch' in esl-alipid?
- Issue comment#79cryptogenomicon2025-03-16 15:58what is 'nmatch' in esl-alipid?
- Issue comment#79permia2025-03-16 15:09what is 'nmatch' in esl-alipid?
- Issue#79permia2025-03-16 15:09what is 'nmatch' in esl-alipid?
- Issue comment#79permia2025-03-16 03:43what is 'nmatch' in esl-alipid?
- Issue#79permia2025-03-16 03:43what is 'nmatch' in esl-alipid?
- Issue comment#79cryptogenomicon2025-03-15 13:46what is 'nmatch' in esl-alipid?
- Issue#79permia2025-03-15 08:48what is 'nmatch' in esl-alipid?
- Issue comment#78Augustin-Zidek2024-11-26 09:47Reduce thread contention, allowing 8-12% faster jackhmmer
- Pull request#78npcarter2024-11-25 18:52
- Issue comment#78npcarter2024-11-25 18:51Reduce thread contention, allowing 8-12% faster jackhmmer
- Issue comment#78Augustin-Zidek2024-11-22 15:32Reduce thread contention, allowing 8-12% faster jackhmmer
- Issue comment#78npcarter2024-11-18 23:39Reduce thread contention, allowing 8-12% faster jackhmmer
- Issue comment#78Augustin-Zidek2024-11-18 18:17Reduce thread contention, allowing 8-12% faster jackhmmer
- Issue comment#78Augustin-Zidek2024-11-14 12:22Reduce thread contention, allowing 8-12% faster jackhmmer
- Issue comment#78npcarter2024-11-13 23:55Reduce thread contention, allowing 8-12% faster jackhmmer
- Issue comment#77cryptogenomicon2024-05-10 13:38Optimizing esl-translate for genomes where alternative start sites and/or unusual codon usage is common?
- Issue comment#77000generic2024-05-10 13:34Optimizing esl-translate for genomes where alternative start sites and/or unusual codon usage is common?
- Issue#77000generic2024-05-10 12:50Optimizing esl-translate for genomes where alternative start sites and/or unusual codon usage is common?
- Issue#76rmhubley2024-04-17 18:25esl-shuffle silently fails to shuffle large sequences
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 10 stars here means stars gained during the window, not the repo's star count.