Phased assembly variant caller
active 2023-08-20 → 2026-03-25 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 949 days from 2023-08-20 to 2026-03-25. Pushes: 14 total, peak 3 in a day. Pull requests: 2 total, peak 1 in a day. Issues: 48 total, peak 6 in a day. Comments: 107 total, peak 8 in a day. Stars: 61 total, peak 4 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| paudano | 95 | 14 | 1 | 61 |
| riyasj327 | 19 | 0 | 0 | 16 |
| GuillaumeHolley | 10 | 0 | 0 | 7 |
| jeffchen2000 | 9 | 0 | 0 | 5 |
| dingyigithub | 4 | 0 | 0 | 3 |
| alisamatisse | 3 | 0 | 0 | 1 |
| wuxiaomia | 3 | 0 | 0 | 2 |
| yue131 | 3 | 0 | 0 | 1 |
| nidhi12k | 3 | 0 | 0 | 1 |
| yangsui0122 | 2 | 0 | 0 | 1 |
| aidenlx | 2 | 0 | 1 | 1 |
| panosioannidis | 2 | 0 | 0 | 0 |
| WeiCSong | 2 | 0 | 0 | 1 |
| epigenomepostdoc | 2 | 0 | 0 | 1 |
| chunlinxiao | 2 | 0 | 0 | 1 |
| OZTaekOppa | 1 | 0 | 0 | 1 |
| joanocha | 1 | 0 | 0 | 1 |
| JoannaTan | 1 | 0 | 0 | 0 |
| faithokamoto | 1 | 0 | 0 | 1 |
| wenlongren | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#75JoannaTan2026-02-13 03:24Is it possible to have nothing in the sv_inv_h*.bed.gz
- Issue comment#74paudano2026-01-16 14:36call_cigar rule fails silently with no error message (memory issue suspected)
- Issue comment#74epigenomepostdoc2026-01-16 13:48call_cigar rule fails silently with no error message (memory issue suspected)
- Issue#72alisamatisse2026-01-12 15:57non-existent insertion in PAV
- Issue comment#72paudano2026-01-08 15:02non-existent insertion in PAV
- Issue comment#70paudano2026-01-08 14:33genome graphs as input?
- Issue comment#74paudano2026-01-08 14:11call_cigar rule fails silently with no error message (memory issue suspected)
- Issue#74epigenomepostdoc2026-01-05 09:55call_cigar rule fails silently with no error message (memory issue suspected)
- Issue#73wenlongren2025-11-30 23:30Can PAV resume from the existing intermediate results ?
- Issue#72alisamatisse2025-11-14 13:41non-existent insertion in PAV
- Issue#71panosioannidis2025-09-17 09:02Can't find the `runlocal` script
- Issue#70panosioannidis2025-09-17 06:30genome graphs as input?
- Issue#69pillar-echo2025-09-13 06:36Inquiry on Applying PAV for Detecting Complex Structural Variations in Plant Genomes
- Issue comment#59alisamatisse2025-08-02 12:38apptainer run error
- Issue comment#67OZTaekOppa2025-04-30 01:18Clarification of output folders and files
- Issue comment#67paudano2025-04-29 12:34Clarification of output folders and files
- Issue#65paudano2025-04-29 12:21Empty Merged BED Files
- Issue comment#61riyasj3272025-02-20 16:59Question about SV calling consistency
- Issue comment#61paudano2025-02-13 13:52Question about SV calling consistency
- Issue comment#65paudano2025-02-13 13:49Empty Merged BED Files
- Issue comment#66paudano2025-02-13 13:47PAV stopping without any error messages
- Issue#66paudano2025-02-13 13:46PAV stopping without any error messages
- Issue comment#58riyasj3272025-02-11 19:58PAV stopping with Hangup message
- Issue comment#66riyasj3272025-02-11 19:57PAV stopping without any error messages
- Issue#52paudano2025-01-21 15:07Error in rule call_merge_haplotypes_batch
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 61 stars here means stars gained during the window, not the repo's star count.