Pipeline to run scE2G
active 2024-11-01 → 2026-08-13 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 651 days from 2024-11-01 to 2026-08-13. Pushes: 139 total, peak 13 in a day. Pull requests: 56 total, peak 4 in a day. Issues: 34 total, peak 4 in a day. Comments: 76 total, peak 7 in a day. Stars: 32 total, peak 6 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| mayasheth | 180 | 110 | 46 | 12 |
| 613weilin | 44 | 16 | 0 | 22 |
| kaybrand | 30 | 8 | 10 | 10 |
| Yanbo-Xu | 17 | 0 | 0 | 10 |
| koefoeden | 12 | 0 | 0 | 7 |
| sugiYag | 9 | 0 | 0 | 5 |
| rosaxma | 5 | 5 | 0 | 0 |
| WanyingX | 4 | 0 | 0 | 3 |
| ioansarr | 4 | 0 | 0 | 2 |
| jenniferzev | 3 | 0 | 0 | 2 |
| kmhennick | 3 | 0 | 0 | 1 |
| dzhu8 | 1 | 0 | 0 | 0 |
| hmummey | 1 | 0 | 0 | 1 |
| adamklie | 1 | 0 | 0 | 0 |
| joseverdezoto | 1 | 0 | 0 | 1 |
| oriolfornes | 1 | 0 | 0 | 0 |
| westonelison | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#101mayasheth2026-04-16 23:07tell snakemake to use scE2G frag_to_norm_bigWig for ATAC_norm
- Issue comment#96kaybrand2026-04-16 22:50scE2G does not support all valid `bedtools` genome file specifications
- Pull request#101kaybrand2026-04-16 22:03
- Pull request#101kaybrand2026-04-16 22:03
- Pull request#99kaybrand2026-03-24 05:02
- Issue comment#90joseverdezoto2025-11-05 14:10Error in hover_plots rule.
- Issue#93oriolfornes2025-09-19 23:55Parallelizing scE2G on HPC systems
- Issue comment#90kaybrand2025-09-16 23:56Error in hover_plots rule.
- Pull request#92mayasheth2025-09-16 16:19
- Issue comment#90kaybrand2025-09-13 03:45Error in hover_plots rule.
- Releasemayasheth2025-08-06 16:39scE2G_v1.2
- Issue#88613weilin2025-08-06 14:52Inconsistent capitlization yielding 'Params' object has no attribute 'IGV_dir' in save_reference_configs rule
- Issue#88koefoeden2025-08-06 12:16Inconsistent capitlization yielding 'Params' object has no attribute 'IGV_dir' in save_reference_configs rule
- Releasemayasheth2025-07-29 20:15scE2G_v1.2
- Issue comment#41ioansarr2025-07-27 09:23Missing python dependencies when using rna.h5ad as input
- Issue comment#41hmummey2025-07-09 03:27Missing python dependencies when using rna.h5ad as input
- Releasemayasheth2025-06-09 15:59scE2G_v1.2
- Releasemayasheth2025-06-09 15:58scE2G_v1.2
- Releasemayasheth2025-06-09 15:56scE2G_v1.2
- Releasemayasheth2025-06-05 17:19scE2G_v1.2
- Issue comment#59613weilin2025-06-04 21:20ATAC fragment input
- Issue comment#59WanyingX2025-06-04 17:01ATAC fragment input
- Issue comment#83kaybrand2025-05-29 18:41QC Metrics HTML report with hover functionality (changed test config)
- Pull request#84mayasheth2025-05-29 17:41
- Pull request#83kaybrand2025-05-28 00:09
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 32 stars here means stars gained during the window, not the repo's star count.