Programs for creating Sequence Similarity Networks and wrappers for pipeline submission on a torque cluster
active 2024-07-25 → 2026-07-22 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 728 days from 2024-07-25 to 2026-07-22. Pushes: 233 total, peak 6 in a day. Pull requests: 59 total, peak 5 in a day. Issues: 103 total, peak 12 in a day. Comments: 125 total, peak 17 in a day. Stars: 2 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
Recent activity
Latest issues, pull requests and releases
- Issue#372rbdavid2026-06-24 20:31Repnode CD-HIT and SNN creation process are run in serial
- Issue#358nilsoberg2026-06-13 03:51Remove DBD::DuckDB requirement
- Issue#356nilsoberg2026-06-12 18:16Add flag for computing NC factor
- Issue#166nilsoberg2026-05-08 19:56Apply the fraction filter to families only
- Issue#321nilsoberg2026-05-04 21:35Add BLAST e-values for GND BLAST jobs
- Issue#319nilsoberg2026-05-04 21:32Optimize XGMML generation code
- Pull request#317nilsoberg2026-05-01 21:11
- Pull request#315nilsoberg2026-04-29 22:37
- Pull request#315nilsoberg2026-04-29 22:37
- Issue#307nilsoberg2026-04-23 19:10Support repnode networks
- Issue#307nilsoberg2026-04-23 19:10Support repnode networks
- Issue#160nilsoberg2026-04-17 20:23Update docs on "Walkthrough for SQLite"
- Issue#162nilsoberg2026-04-17 20:23Support custom cluster naming and accession GND inputs
- Issue#36nilsoberg2026-04-17 20:23Update sequence ID checks to support new unknown ID format
- Issue#247nilsoberg2026-04-17 20:22Update documentation
- Issue#203nilsoberg2026-04-17 20:22Consistently apply command line arguments
- Issue#266nilsoberg2026-04-17 20:22Investigate MUSCLE version discrepancies
- Issue#215nilsoberg2026-04-17 20:22Add description of keys used in stats.json
- Issue#178nilsoberg2026-04-17 20:21Add sequences to SSN nodes for FASTA input files
- Issue#287nilsoberg2026-04-17 20:21Support domain sequences in length histogram computation
- Issue#301nilsoberg2026-04-17 20:21Update job scheduler specific configs
- Issue#300nilsoberg2026-04-17 20:21Advanced functionality of Taxonomy workflow
- Issue#301rbdavid2026-04-17 15:58Update job scheduler specific configs
- Pull request#293nilsoberg2026-04-08 21:59
- Issue#286nilsoberg2026-03-16 18:33Fix ID list retrieval error
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 2 stars here means stars gained during the window, not the repo's star count.