EpiAware/PrototypeCompositionalProbablisticInfectiousDiseaseModelling
View on GitHub ↗Related repositories →We outline the key requirements for a composable infectious disease modelling framework and then present a prototype that addresses these requirements through composable epidemiological components built on Julia's type system and Turing.jl
active 2025-09-05 → 2025-12-10 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 97 days from 2025-09-05 to 2025-12-10. Pushes: 169 total, peak 20 in a day. Pull requests: 18 total, peak 2 in a day. Issues: 53 total, peak 10 in a day. Comments: 71 total, peak 7 in a day. Stars: 2 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| seabbs | 261 | 126 | 12 | 45 |
| SamuelBrand1 | 77 | 32 | 5 | 23 |
| sbfnk | 18 | 11 | 1 | 3 |
Recent activity
Latest issues, pull requests and releases
- Pull request#127SamuelBrand12025-12-09 19:28
- Issue#122seabbs2025-12-08 17:08References for: Make sure we cite all packages we discuss
- Issue comment#76seabbs2025-12-08 17:04Introduction: Work in ONS example
- Issue comment#117seabbs2025-12-08 17:02Improve schematics
- Issue comment#75seabbs2025-12-08 11:03Introduction to discussion: Improve width of toolkit references and move it to the discussion
- Issue#94seabbs2025-12-08 11:03case studies: Remove figure legends?
- Issue comment#94seabbs2025-12-08 11:03case studies: Remove figure legends?
- Pull request#118sbfnk2025-12-08 09:23
- Issue comment#88seabbs2025-12-05 18:34Case studies: Add a schematic to show the model structures for each case study and how they overlap
- Issue#109seabbs2025-12-05 18:20Review abstract word count and add author summary for PLOS submission
- Issue#115seabbs2025-12-05 18:14Journal target
- Issue#115seabbs2025-12-05 18:14Journal target
- Issue#111seabbs2025-12-05 15:53Manuscript reframing for PLOS Comp Bio submission (LLM review)
- Issue#110seabbs2025-12-05 15:30Verify manuscript formatting meets PLOS requirements
- Issue#107seabbs2025-12-05 15:03Review text that discusses EpiAwareR case study
- Issue#106sbfnk2025-12-05 14:30Add links to EpiAwareR docs from the README
- Pull request#102seabbs2025-12-05 13:59
- Issue comment#77seabbs2025-12-05 12:49Introduction: Add to operadic structure definition
- Pull request#100seabbs2025-12-05 12:07
- Issue#99seabbs2025-12-05 12:07Check all citations render
- Issue#92seabbs2025-12-05 11:03Authorship
- Issue#95seabbs2025-12-04 13:13Case studies: Check Mishra et al priors
- Issue comment#90seabbs2025-12-04 09:35Add Case Study 3: ODE-based SIR model with deterministic and stochastic variants
- Issue comment#90SamuelBrand12025-12-03 22:24Add Case Study 3: ODE-based SIR model with deterministic and stochastic variants
- Issue#93seabbs2025-12-03 11:27Case studies: EpiAwareR integration
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 2 stars here means stars gained during the window, not the repo's star count.