CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
active 2024-02-08 → 2026-04-07 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 790 days from 2024-02-08 to 2026-04-07. Pushes: 17 total, peak 9 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 17 total, peak 2 in a day. Comments: 24 total, peak 5 in a day. Stars: 42 total, peak 6 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| renzilin | 20 | 8 | 0 | 9 |
| LLuser12 | 8 | 8 | 0 | 0 |
| ZhangDufei | 8 | 1 | 0 | 7 |
| zhxiaokang | 6 | 0 | 0 | 3 |
| shenweiyan | 4 | 0 | 0 | 1 |
| done520 | 3 | 0 | 0 | 2 |
| Charlie-Lin-215 | 3 | 0 | 0 | 2 |
| Cauch-BS | 2 | 0 | 0 | 0 |
| AmirUCR | 1 | 0 | 0 | 0 |
| haonanzc | 1 | 0 | 0 | 0 |
| andresrr1 | 1 | 0 | 0 | 0 |
| JiayiJennie | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#10renzilin2025-09-27 05:35Generating multiple optimized sequences
- Issue comment#10zhxiaokang2025-09-26 02:49Generating multiple optimized sequences
- Issue comment#10renzilin2025-09-25 08:46Generating multiple optimized sequences
- Issue#11AmirUCR2025-09-07 06:03Does not run
- Issue comment#11ZhangDufei2025-09-07 06:01Does not run
- Issue#10zhxiaokang2025-05-07 09:39Generating multiple optimized sequences
- Issue comment#9Charlie-Lin-2152025-04-11 07:37The problem of using training loss for early stopping.
- Issue comment#9ZhangDufei2025-04-11 07:21The problem of using training loss for early stopping.
- Issue comment#9ZhangDufei2025-04-11 06:57The problem of using training loss for early stopping.
- Issue comment#9Charlie-Lin-2152025-04-11 06:22The problem of using training loss for early stopping.
- Issue comment#9ZhangDufei2025-04-11 05:50The problem of using training loss for early stopping.
- Issue#9Charlie-Lin-2152025-04-11 03:24The problem of using training loss for early stopping.
- Issue comment#7zhxiaokang2025-03-28 02:55Sequence longer than 2000
- Issue#7zhxiaokang2025-03-28 02:55Sequence longer than 2000
- Issue#8JiayiJennie2025-03-20 06:02All four models
- Issue comment#7ZhangDufei2025-03-18 07:50Sequence longer than 2000
- Issue comment#7zhxiaokang2025-03-15 09:08Sequence longer than 2000
- Issue comment#7ZhangDufei2025-03-14 07:23Sequence longer than 2000
- Issue#7zhxiaokang2025-03-07 08:24Sequence longer than 2000
- Issue comment#6renzilin2025-02-05 09:20Questions about accuracy.
- Issue#5renzilin2025-02-04 11:49A confusing question
- Issue#6andresrr12025-02-03 23:36Questions about accuracy.
- Issue comment#5renzilin2025-01-21 03:26A confusing question
- Issue#5haonanzc2025-01-21 02:58A confusing question
- Issue comment#4renzilin2024-09-12 08:44Request to add a license for CodonBERT
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 42 stars here means stars gained during the window, not the repo's star count.