Precision HLA typing from next-generation sequencing data
active 2023-08-18 → 2026-06-08 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1026 days from 2023-08-18 to 2026-06-08. Pushes: 0 total, peak 0 in a day. Pull requests: 2 total, peak 2 in a day. Issues: 24 total, peak 8 in a day. Comments: 32 total, peak 11 in a day. Stars: 45 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| b-schubert | 21 | 0 | 0 | 10 |
| vodkatad | 5 | 0 | 0 | 4 |
| SirKuikka | 4 | 0 | 0 | 1 |
| malonzm1 | 4 | 0 | 0 | 2 |
| Hupingdong | 3 | 0 | 0 | 3 |
| jkxm | 2 | 0 | 2 | 0 |
| jonasscheid | 2 | 0 | 0 | 2 |
| kiranfranklin999 | 2 | 0 | 0 | 2 |
| edceeyuchen | 1 | 0 | 0 | 1 |
| dincerkilic | 1 | 0 | 0 | 0 |
| valeriaMCuevas | 1 | 0 | 0 | 0 |
| mattzano | 1 | 0 | 0 | 1 |
| karlestira | 1 | 0 | 0 | 1 |
| Zaroganos | 1 | 0 | 0 | 1 |
| riasc | 1 | 0 | 0 | 1 |
| SunYong0821 | 1 | 0 | 0 | 0 |
| lukaas33 | 1 | 0 | 0 | 0 |
| StephenLi55 | 1 | 0 | 0 | 1 |
| QianRongAn | 1 | 0 | 0 | 0 |
| ZJURenyi | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#152jonasscheid2026-03-03 15:20Modernize to pip-installable package (v1.5.0)
- Issue comment#152Zaroganos2026-02-28 11:16Modernize to pip-installable package (v1.5.0)
- Issue comment#152jonasscheid2026-02-27 12:06Modernize to pip-installable package (v1.5.0)
- Issue#151malonzm12025-02-11 05:34Error running OptiType singularity
- Issue comment#132malonzm12025-02-11 05:34error using docker
- Issue comment#151malonzm12025-02-11 05:33Error running OptiType singularity
- Issue#151malonzm12025-02-11 02:18Error running OptiType singularity
- Issue#150dincerkilic2024-10-02 08:20Mouse WES
- Issue comment#1123Mker2024-09-23 16:26Ways to update hla reference/allele data?
- Issue#149valeriaMCuevas2024-09-10 06:18OptiType Fails to Open Intermediate BAM File
- Issue#148lukaas332024-07-31 10:36IOError: [Errno 2] could not open alignment file
- Issue comment#110mattzano2024-06-29 11:35IOError: [Errno 2] could not open alignment file `result/2020_07_08_14_33_58/2020_07_08_14_33_58_1.bam`: No such file or directory
- Issue comment#128b-schubert2024-06-17 10:48The SolverFactory was unable to create the solver "glpk"
- Issue#128b-schubert2024-06-17 10:48The SolverFactory was unable to create the solver "glpk"
- Issue comment#134b-schubert2024-06-17 10:47Does OptiType only predict alleles in "freq_alleles"
- Issue#134b-schubert2024-06-17 10:47Does OptiType only predict alleles in "freq_alleles"
- Issue comment#140b-schubert2024-06-17 10:44this team is no longer maintained
- Issue comment#97b-schubert2024-06-17 10:42Running OptiType for non human samples
- Issue comment#142b-schubert2024-06-17 10:32unpaired reads, no mismatches, ambiguous
- Issue#142b-schubert2024-06-17 10:32unpaired reads, no mismatches, ambiguous
- Issue comment#145b-schubert2024-06-17 10:27core dumped bad_alloc in seqan
- Issue#145b-schubert2024-06-17 10:27core dumped bad_alloc in seqan
- Issue comment#133b-schubert2024-06-17 10:25Hi dear @andras86 , What's the meanning for "introns from " as picture beblow? I found it apprearing in https://github.com/FRED-2/OptiType/blob/master/hlatyper.py
- Issue#133b-schubert2024-06-17 10:25Hi dear @andras86 , What's the meanning for "introns from " as picture beblow? I found it apprearing in https://github.com/FRED-2/OptiType/blob/master/hlatyper.py
- Issue comment#139b-schubert2024-06-17 10:24Installation problem with pyomo module
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 45 stars here means stars gained during the window, not the repo's star count.