A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity.
active 2024-03-20 → 2026-05-26 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 798 days from 2024-03-20 to 2026-05-26. Pushes: 252 total, peak 15 in a day. Pull requests: 53 total, peak 4 in a day. Issues: 44 total, peak 6 in a day. Comments: 70 total, peak 7 in a day. Stars: 3 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| jmitchell81 | 162 | 103 | 32 | 8 |
| kjkrishnan | 120 | 62 | 13 | 16 |
| dimalvovs | 98 | 35 | 7 | 21 |
| github-actions[bot] | 48 | 48 | 0 | 0 |
| Copilot | 23 | 1 | 0 | 20 |
| snag-gh | 7 | 2 | 1 | 3 |
| mindykimgraham | 3 | 0 | 0 | 1 |
| bryan-mccarty | 2 | 0 | 0 | 1 |
| weshorton | 1 | 1 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#189kjkrishnan2026-05-26 17:43
- Pull request#185kjkrishnan2026-04-29 20:15
- Pull request#181kjkrishnan2026-03-27 21:09
- Issue#158kjkrishnan2026-03-16 21:39Convert object to data frame
- Issue#139kjkrishnan2026-03-12 17:23Network plotting function naming
- Issue#156kjkrishnan2026-03-12 17:22gene_network plot giving subscript out of bounds error if vectors of clusters are passed to clust and OutgoingSignalingClust. For example:
- Issue#155kjkrishnan2026-03-09 21:49signaling_network gives an error requiring finite 'xlim' values when using the showIncomingSignalingClusts argument. For example, if I wanted to look at incoming signal to the CD8 T cell clusters:
- Issue#164kjkrishnan2026-03-06 00:43Errors for input validation are vague
- Pull request#170kjkrishnan2026-03-06 00:41
- Issue#171kjkrishnan2026-03-06 00:38test_differential_linkages includes but doesn't use test_statistic argument
- Issue#153kjkrishnan2026-03-04 23:02ortholog table format unclear
- Pull request#169kjkrishnan2026-03-04 18:44
- Issue comment#164kjkrishnan2026-03-03 21:22Errors for input validation are vague
- Issue#158kjkrishnan2026-02-24 21:51Convert object to data frame
- Issue#158kjkrishnan2026-02-24 21:51Convert object to data frame
- Issue#158kjkrishnan2026-02-24 21:51Convert object to data frame
- Issue#154kjkrishnan2026-02-24 21:49circos_ligand_receptor is sometimes throwing an error at the step where expression values are obtained from cl_signaling matrices (ex. LILRB2). However, this is inconsistent. For example,
- Issue#157kjkrishnan2026-02-24 21:48gene_network plot title is not working for more than one cluster in the clust argument with no OutgoingSignalingClust
- Issue#149kjkrishnan2026-01-13 18:14Circos plot fails to render if some ligands of a receptor in the rl_map are not in the z_scores matrix
- Issue#152dimalvovs2025-05-01 14:25h5 support
- Pull request#151jmitchell812025-01-29 19:23
- Pull request#151jmitchell812025-01-29 16:28
- Pull request#150jmitchell812025-01-29 16:20
- Pull request#150jmitchell812025-01-27 19:01
- Issue#149jmitchell812025-01-27 18:06Circos plot fails to render if some ligands of a receptor in the rl_map are not in the z_scores matrix
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 3 stars here means stars gained during the window, not the repo's star count.