Differential abundance (DA) and correlation analyses for microbial absolute abundance data
active 2023-08-15 → 2026-05-24 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1014 days from 2023-08-15 to 2026-05-24. Pushes: 23 total, peak 3 in a day. Pull requests: 14 total, peak 2 in a day. Issues: 131 total, peak 10 in a day. Comments: 214 total, peak 19 in a day. Stars: 50 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| FrederickHuangLin | 96 | 21 | 6 | 43 |
| Maggie8888 | 33 | 2 | 1 | 21 |
| antagomir | 21 | 0 | 0 | 14 |
| Daenarys8 | 16 | 0 | 2 | 7 |
| aimirza | 13 | 0 | 0 | 7 |
| jorondo1 | 8 | 0 | 0 | 5 |
| agrier-wcm | 6 | 0 | 0 | 6 |
| kimcandel | 6 | 0 | 0 | 4 |
| tybonic | 5 | 0 | 0 | 4 |
| imonteroo | 4 | 0 | 0 | 3 |
| mladen5000 | 4 | 0 | 0 | 2 |
| LLansing | 4 | 0 | 0 | 0 |
| RachBioHaz | 4 | 0 | 0 | 3 |
| DavidRR24 | 4 | 0 | 0 | 3 |
| Lobna-H | 4 | 0 | 0 | 3 |
| ChihYingLu | 3 | 0 | 0 | 1 |
| christinaemma | 3 | 0 | 0 | 1 |
| Axolotl233 | 3 | 0 | 0 | 1 |
| marcinschmidt | 3 | 0 | 0 | 1 |
| PKoteja | 3 | 0 | 0 | 2 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#335MinhajurRahmanShahin2026-05-24 23:21III-ANCOM-II
- Issue#335MinhajurRahmanShahin2026-05-24 23:20III-ANCOM-II
- Issue#330microbluvrsarah2026-03-20 20:43Installation error
- Issue comment#329FrederickHuangLin2026-03-14 23:29ANCOMBC Install Challenges related to namespace:CVXR
- Issue comment#329xec-cm2026-03-13 08:16ANCOMBC Install Challenges related to namespace:CVXR
- Pull request#322zjardyn2025-10-01 21:43
- Issue#321samuelbloomfield2025-09-15 05:28rbind warning
- Issue#319gkuhlenbaum2025-07-23 08:45ANCOM-BC2 returns ASV and not Genus despite argument "rank = "Genus"
- Issue comment#277jorondo12025-07-15 19:13Question regarding taxon-specific biases
- Issue#317joanaseneca2025-07-03 12:17Problem with setting fix and rand formulas
- Issue#316BKretzler2025-06-17 16:31SECOM Error: non-conformable arrays
- Issue comment#307BKretzler2025-05-21 15:46ANCOM BC2 interpretation passed_SS isssues
- Issue comment#196G-Molano-LA2025-05-14 15:51Correct input for metagenome assembled genome abundance
- Issue#312TonimaRahman2025-05-01 02:54Issue with rand_fomula in ANCOMBC-2
- Issue comment#243sophiaaredas2025-04-22 17:15ancombc2 output fmt length exceeds maximal format length 8192
- Issue#311rmSeanDarcy2025-04-16 10:08Data input
- Issue#310drjingma2025-04-11 22:21secom_linear internal function DescTools::Winsorize issue
- Issue comment#309DavidRR242025-04-10 01:41Does lib_cut only remove samples with a minimum sequencing threshold? Modification of these parameter below the minimum threshold of sequences significantly affects my results.
- Issue#309DavidRR242025-04-10 01:08Does lib_cut only remove samples with a minimum sequencing threshold? Modification of these parameter below the minimum threshold of sequences significantly affects my results.
- Issue comment#289DavidRR242025-04-10 00:17Issue with unclassified taxa Inflating DA analysis at specified taxonomic levels in ANCOM-BC2
- Issue comment#288Abbie-Williams2025-04-07 22:51Different result from ancombc 2.0 and ancombc 2.6
- Issue#308EdoardoPiombo2025-04-04 12:25ANCOM-BC2 error: Group variable needs to be in fix_formula, but it is colinear with other terms in it
- Issue#307julie-nlhr2025-04-03 16:17ANCOM BC2 interpretation isssues
- Issue#306Marjan-Ghotbi2025-04-03 06:21AncomBC error
- Issue comment#279medinacarolina2025-03-28 10:11Different taxonomy level aggregration and extracting full taxonomic classification.
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 50 stars here means stars gained during the window, not the repo's star count.