Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
active 2023-09-19 → 2026-06-05 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 991 days from 2023-09-19 to 2026-06-05. Pushes: 13 total, peak 5 in a day. Pull requests: 5 total, peak 2 in a day. Issues: 9 total, peak 1 in a day. Comments: 17 total, peak 3 in a day. Stars: 4 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| poojachandra | 12 | 10 | 1 | 0 |
| lbeltrame | 8 | 0 | 0 | 5 |
| ycl6 | 6 | 0 | 1 | 5 |
| gavinha | 5 | 3 | 2 | 0 |
| SPPearce | 3 | 0 | 0 | 3 |
| ilykos | 3 | 0 | 0 | 2 |
| ekushele | 2 | 0 | 0 | 0 |
| EfraMP | 1 | 0 | 0 | 0 |
| benbfly | 1 | 0 | 0 | 0 |
| IanCodes | 1 | 0 | 0 | 1 |
| sroener | 1 | 0 | 0 | 1 |
| feihongloveworld | 1 | 0 | 0 | 0 |
| teacakedeadlift | 1 | 0 | 0 | 0 |
| abcoxyzide | 1 | 0 | 0 | 0 |
| istvankleijn | 1 | 0 | 1 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#25ekushele2025-03-30 11:28Create Panel of normal
- Releaseajnetzley2024-11-22 22:51
- Issue#24EfraMP2024-07-25 13:47Possible typo in wiki
- Releasepoojachandra2024-07-09 19:32v0.5.1
- Issue comment#21SPPearce2024-06-28 14:51Format Imports
- Issue comment#21SPPearce2024-06-10 14:06Format Imports
- Issue#20poojachandra2024-06-09 00:55dependencies missing comma
- Pull request#21poojachandra2024-06-09 00:55
- Issue comment#21lbeltrame2024-05-29 09:53Format Imports
- Issue#23benbfly2024-05-27 08:44In params.tx file, Log-likelihood gets set to NA
- Issue comment#21SPPearce2024-05-23 15:07Format Imports
- Issue#22ekushele2024-03-20 19:07Error in quantile.default, missing values not allowed
- Issue comment#14ycl62024-02-11 15:41Broken CLI : runIchorCNA.R: line 50: Syntaxerror
- Pull request#21istvankleijn2024-02-05 17:04
- Issue#20abcoxyzide2024-01-17 10:13dependencies missing comma
- Issue#19teacakedeadlift2024-01-15 21:46Plotting alternate solutions, segments, and other outputs.
- Issue comment#10ilykos2023-12-10 22:07Clarify documentation on calling versus tumor fraction estimation
- Issue comment#10lbeltrame2023-12-10 17:19Clarify documentation on calling versus tumor fraction estimation
- Issue#18ilykos2023-12-10 14:10In what situations should maxGenomeSubclonal and maxCnaSubclonal be reconsidered?
- Issue comment#10ilykos2023-12-10 14:04Clarify documentation on calling versus tumor fraction estimation
- Issue comment#14lbeltrame2023-11-30 08:37Broken CLI : runIchorCNA.R: line 50: Syntaxerror
- Issue#17feihongloveworld2023-11-27 09:02could the ichorCNA be used for gDNA
- Pull request#15gavinha2023-10-05 22:23
- Pull request#16gavinha2023-10-05 22:22
- Issue comment#16ycl62023-09-27 14:50Change dependency to require R-4.2
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 4 stars here means stars gained during the window, not the repo's star count.