The Isoforms from Single-Cell; Long-read Expression Suite
active 2024-07-09 → 2026-01-31 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 572 days from 2024-07-09 to 2026-01-31. Pushes: 7 total, peak 2 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 10 total, peak 2 in a day. Comments: 9 total, peak 2 in a day. Stars: 22 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| timbitz | 7 | 3 | 0 | 4 |
| mkabza | 4 | 4 | 0 | 0 |
| shizhuom | 4 | 0 | 0 | 1 |
| sbresnahan | 4 | 0 | 0 | 2 |
| brandon-hastings | 2 | 0 | 0 | 2 |
| wongjy2 | 1 | 0 | 0 | 0 |
| zihian | 1 | 0 | 0 | 0 |
| WhaleGe | 1 | 0 | 0 | 0 |
| skudashev | 1 | 0 | 0 | 0 |
| HarrisonWismer | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#3brandon-hastings2025-07-17 10:10ncpu doesn't seem to work
- Issue comment#3brandon-hastings2025-07-17 10:07ncpu doesn't seem to work
- Issue#16wongjy22025-07-06 21:35Low percentage of reads assigned to provided transcript set
- Issue#15HarrisonWismer2025-06-23 18:35Data preparation for PacBio MAS-Isoseq
- Issue#14zihian2025-05-05 10:16tcc_to_gene SparseArray too many groups (matrix of sums will be too big)
- Issue#12WhaleGe2024-12-31 07:41Merge transcript quantification reseults (RangedSummarizedExperiment) of multiple samples
- Issue comment#11timbitz2024-12-16 23:36Best Step for Running SQANTI3 Filtering on Isoforms
- Issue comment#10timbitz2024-12-16 23:34Read to Isoforms Mapping
- Issue comment#8sbresnahan2024-11-01 13:53`export_gtf` returns only exons
- Issue#11skudashev2024-10-28 16:05Best Step for Running SQANTI3 Filtering on Isoforms
- Issue comment#7timbitz2024-10-25 03:36prepare_transcripts range width limit error
- Issue comment#8timbitz2024-10-25 03:33`export_gtf` returns only exons
- Issue#10shizhuom2024-10-21 01:05Read to Isoforms Mapping
- Issue#9shizhuom2024-10-21 01:02Too many novel isoforms
- Issue comment#9shizhuom2024-10-21 01:02Too many novel isoforms
- Issue#9shizhuom2024-10-13 19:22Too many novel isoforms
- Issue#8sbresnahan2024-09-30 10:41`export_gtf` returns only exons
- Issue comment#7sbresnahan2024-09-28 15:55prepare_transcripts range width limit error
- Issue#7sbresnahan2024-09-28 15:23prepare_transcripts range width limit error
- Releasemkabza2024-07-10 00:02Isosceles 0.2.1
- Releasemkabza2024-07-09 23:23Isosceles 0.2.1
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 22 stars here means stars gained during the window, not the repo's star count.