Coarse-graining of large single-cell RNA-seq data into metacells
active 2023-08-19 → 2026-04-17 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 973 days from 2023-08-19 to 2026-04-17. Pushes: 25 total, peak 6 in a day. Pull requests: 6 total, peak 2 in a day. Issues: 7 total, peak 3 in a day. Comments: 5 total, peak 1 in a day. Stars: 30 total, peak 5 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| leonardHerault | 20 | 15 | 3 | 2 |
| dagfeller | 8 | 5 | 0 | 0 |
| mariiabilous | 6 | 2 | 2 | 1 |
| Phoenix12580 | 4 | 0 | 0 | 2 |
| mteleman | 3 | 3 | 0 | 0 |
| lgatto | 1 | 0 | 1 | 0 |
| oconntk | 1 | 0 | 0 | 0 |
| ChenWeiyan | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#35leonardHerault2026-04-17 10:44Construct metacell with existing graph
- Issue#38oconntk2026-04-13 17:19SCimplify_for_Seurat fails with high-cardinality metadata
- Issue#35ChenWeiyan2026-03-18 14:18Construct metacell with existing graph
- Pull request#33leonardHerault2026-02-18 20:57
- Issue comment#31mariiabilous2025-06-26 12:21supercell_purity entropy measure
- Issue comment#28Phoenix125802024-11-17 03:50can i replace the PCA data in SCimplify?
- Issue comment#29leonardHerault2024-10-24 09:04Error in ge %*% M.AV : Cholmod error 'problem too large' at file ../Core/cholmod_dense.c, line 102 Calls: makeSeuratMC -> supercell_GE -> %*% -> %*% In addition: Warning messages: 1: In asMethod(object) : sparse->dense coercion: allocating vector of size 19.0 GiB 2: In asMethod(object) : sparse->dense coercion: allocating vector of size 2.5 GiB Execution halted
- Issue#28Phoenix125802024-08-16 17:32can i replace the PCA data in SCimplify?
- Issue comment#28Phoenix125802024-08-16 17:32can i replace the PCA data in SCimplify?
- Issue#28Phoenix125802024-08-10 16:04can i replace the PCA data in SCimplify?
- Pull request#25leonardHerault2024-07-19 07:46
- Pull request#24leonardHerault2024-07-19 07:42
- Issue#5dagfeller2024-06-01 12:18chore: GitHub templates
- Issue#9dagfeller2024-06-01 12:18ci: static code analysis
- Issue#4dagfeller2024-06-01 12:18chore: contributing instructions
- Pull request#21lgatto2023-09-19 22:28
- Pull request#19mariiabilous2023-09-14 08:21
- Pull request#20mariiabilous2023-09-13 12:46
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 30 stars here means stars gained during the window, not the repo's star count.