Metagenomic Estimation of Dietary Intake and Content.
active 2024-02-03 → 2026-03-04 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 761 days from 2024-02-03 to 2026-03-04. Pushes: 48 total, peak 7 in a day. Pull requests: 8 total, peak 3 in a day. Issues: 50 total, peak 6 in a day. Comments: 82 total, peak 7 in a day. Stars: 33 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| cdiener | 117 | 47 | 6 | 49 |
| cschu | 17 | 0 | 1 | 12 |
| ktmbiome-niaid | 6 | 0 | 0 | 3 |
| alexvcrr | 6 | 0 | 0 | 3 |
| atyakhtmpg | 4 | 0 | 0 | 2 |
| LesleyHoyles | 3 | 0 | 0 | 2 |
| jjoropezav | 3 | 0 | 0 | 1 |
| joelwwh | 3 | 0 | 0 | 1 |
| nicodcroig | 3 | 0 | 0 | 1 |
| matthpich | 2 | 0 | 0 | 0 |
| scottdossantos | 2 | 0 | 0 | 1 |
| fredoowarren | 2 | 0 | 0 | 0 |
| BangzhuoTongUU | 2 | 0 | 0 | 1 |
| BioinfoPhD | 2 | 0 | 0 | 1 |
| nayeon1994 | 2 | 0 | 0 | 1 |
| jszarvas | 2 | 0 | 0 | 1 |
| robbueck | 1 | 0 | 0 | 1 |
| MarwanMaj | 1 | 0 | 0 | 0 |
| Feanor-Silmarillion | 1 | 0 | 0 | 0 |
| seangibbons | 1 | 1 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#34cdiener2026-01-22 10:54Food_abundance.csv output inconsistencies
- Issue#37BangzhuoTongUU2026-01-21 09:08Low number of reads mapped per sample in the food abundance table
- Issue comment#37BangzhuoTongUU2026-01-21 09:08Low number of reads mapped per sample in the food abundance table
- Issue comment#35cdiener2025-07-23 08:41Stuck at step "Building the hashes" for 10 days
- Issue#35Feanor-Silmarillion2025-07-16 06:04Stuck at step "Building the hashes" for 10 days
- Issue comment#24cdiener2025-06-26 12:20Build suggestions etc
- Issue comment#24robbueck2025-06-20 07:49Build suggestions etc
- Issue comment#28cdiener2025-05-14 16:50Few reads are classified by Medi during kraken2 step
- Issue#33nicodcroig2025-05-13 15:06Empty .tsv after Kraken2 classification
- Issue comment#33nicodcroig2025-05-09 11:18Empty .tsv after Kraken2 classification
- Issue comment#32cdiener2025-05-09 10:28Medi DB file path and correct configuration
- Issue comment#33cdiener2025-05-09 10:23Empty .tsv after Kraken2 classification
- Issue#33nicodcroig2025-05-06 17:45Empty .tsv after Kraken2 classification
- Issue#32somakchowdhury2025-05-01 08:18Medi DB file path and correct configuration
- Issue comment#31cdiener2025-04-28 13:32Kraken confidence threshold?
- Issue#31miaumc2025-04-25 08:03Kraken confidence threshold?
- Issue comment#27cdiener2025-04-18 08:01Removal of the superkingdom rank in NCBI taxonomy breaks MEDI
- Issue comment#27atyakhtmpg2025-04-17 21:08Removal of the superkingdom rank in NCBI taxonomy breaks MEDI
- Pull request#30cdiener2025-04-17 12:54
- Issue comment#27cdiener2025-04-17 12:36Removal of the superkingdom rank in NCBI taxonomy breaks MEDI
- Releasecdiener2025-04-17 12:33MEDI 0.2.1
- Pull request#29cdiener2025-04-17 12:31
- Pull request#29cdiener2025-04-17 12:31
- Issue#14cdiener2025-04-17 08:33Is there a pre-built database available for download?
- Issue#14cdiener2025-04-17 08:33Is there a pre-built database available for download?
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 33 stars here means stars gained during the window, not the repo's star count.