Reference-guided transcript discovery and quantification for long read RNA-Seq data
active 2023-11-08 → 2026-05-25 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 930 days from 2023-11-08 to 2026-05-25. Pushes: 125 total, peak 8 in a day. Pull requests: 55 total, peak 8 in a day. Issues: 77 total, peak 5 in a day. Comments: 271 total, peak 13 in a day. Stars: 45 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| andredsim | 123 | 24 | 8 | 79 |
| cying111 | 116 | 28 | 13 | 48 |
| lingminhao | 85 | 36 | 10 | 22 |
| SuiYue-2308 | 51 | 23 | 14 | 4 |
| Copilot | 31 | 2 | 6 | 17 |
| jonathangoeke | 26 | 2 | 0 | 10 |
| apsteinberg | 20 | 0 | 0 | 16 |
| ch99l | 14 | 8 | 0 | 3 |
| Sefi196 | 7 | 0 | 0 | 7 |
| abcdtree | 7 | 0 | 0 | 4 |
| dudududu12138 | 6 | 0 | 0 | 4 |
| sparthib | 6 | 0 | 0 | 4 |
| hafiz-ismail | 5 | 0 | 1 | 2 |
| BerrocalRubio333 | 5 | 0 | 0 | 5 |
| olazaro-ibri | 5 | 0 | 0 | 4 |
| alexyfyf | 5 | 0 | 0 | 1 |
| haydenji0731 | 4 | 0 | 0 | 2 |
| mechealeth | 4 | 0 | 0 | 2 |
| tamuanand | 4 | 0 | 0 | 1 |
| yinshiyi | 4 | 0 | 0 | 4 |
Recent activity
Latest issues, pull requests and releases
- Issue#569lingminhao2026-05-25 10:24implement opt.rcAssignment which integrates the parameters related to assigning read classes to transcripts
- Issue#563lingminhao2026-05-22 08:36summarise by exon count
- Issue#570lingminhao2026-05-05 06:49implement bambu.singlecell / bambu.spatial function as a wrapper to call bambu in single cell or spatial mode
- Pull request#568SuiYue-23082026-04-17 08:36
- Issue#571SuiYue-23082026-04-17 06:25[Bug]: The processByBam now is always TRUE in single cell mode
- Issue comment#565cying1112026-04-17 02:48Tidy readClassList and quantData
- Issue comment#559cying1112026-04-16 09:14fix: adjust NDR threshold behavior. Previously, NDR = 1 would overrid…
- Issue comment#565jonathangoeke2026-04-16 06:44Tidy readClassList and quantData
- Issue comment#564hafiz-ismail2026-04-16 04:48add functionality to write to GFF file
- Issue#564hafiz-ismail2026-04-16 04:39add functionality to write to GFF file
- Pull request#562hafiz-ismail2026-04-16 04:10
- Issue comment#559cying1112026-04-15 08:30fix: adjust NDR threshold behavior. Previously, NDR = 1 would overrid…
- Pull request#557lingminhao2026-04-15 04:30
- Pull request#556lingminhao2026-04-15 04:28
- Pull request#556lingminhao2026-04-15 04:24
- Pull request#555lingminhao2026-04-15 01:01
- Pull request#553SuiYue-23082026-04-13 08:48
- Issue comment#552SuiYue-23082026-04-13 08:46updating devel_pre_v4_TSS
- Pull request#552SuiYue-23082026-04-10 03:48
- Pull request#542lingminhao2026-04-10 02:36
- Issue#551sophiachen12026-04-04 02:53BiocParallel error
- Pull request#542lingminhao2026-02-15 14:10
- Pull request#542lingminhao2026-02-15 14:09
- Issue#541lyj956182026-02-12 20:48BiocParallel errors when running bambu
- Issue#540jonathangoeke2026-02-11 01:58Update code map of all bambu functions (svg file)
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 45 stars here means stars gained during the window, not the repo's star count.