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ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

active 2024-12-062026-06-15 (UTC)

Partial coverage12,827 / 14,696 hourly files (87%) · 2 absent upstream · 1,863 failed, retryable2024-12-062026-08-11 (UTC)— sampled evenly across the window, so rankings and trends hold; absolute counts scale up.
Events
144
Pushes
14
Pull requests
12
Issues
20
Stars
28
Forks
6

Activity over time

Daily event counts in the loaded window

Line chart, 557 days from 2024-12-06 to 2026-06-15. Pushes: 14 total, peak 6 in a day. Pull requests: 12 total, peak 5 in a day. Issues: 20 total, peak 3 in a day. Comments: 60 total, peak 4 in a day. Stars: 28 total, peak 2 in a day.

  • Pushes
  • Pull requests
  • Issues
  • Comments
  • Stars

Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.

Top contributors

Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity

Recent activity

Latest issues, pull requests and releases

  • Issue comment#2329Heime-Jorgen2026-06-15 23:17
    K-Lean: machine-verified contracts for chromatin accessibility and peak calling
  • Issue#2327wujian-njau2026-05-31 04:41
    Hello, I encountered the error 'ERROR Found in .addGeneScoreMat TmpGS for' while using ArchR to create createArrowFiles
  • Issue comment#2324immanuelazn2026-04-03 09:20
    Batch correct by other algorithm
  • Issue#2319shaoxiong25882026-01-06 03:23
    subscript out of bounds error in addIterativeLSI on Ubuntu but works on Windows
  • Issue#2316YunjieLi222025-12-12 04:11
    error occurred in addReproduciblePeakSet
  • Issue#2316YunjieLi222025-12-12 04:11
    error occurred in addReproduciblePeakSet
  • Issue#2315zeyan-07172025-12-01 17:03
    Error: addGroupCoverages
  • Issue#2315zeyan-07172025-12-01 17:03
    Error: addGroupCoverages
  • Issue comment#2314immanuelazn2025-11-24 17:09
    cmdError in system2(path, "callpeak -h", stdout = TRUE, stderr = TRUE)
  • Issue#2314aowenson-imm2025-11-24 17:09
    cmdError in system2(path, "callpeak -h", stdout = TRUE, stderr = TRUE)
  • Issue comment#2167ananyakohli172025-10-25 18:40
    Long Computation Time for addClusters with Multiple Samples
  • Issue comment#2313immanuelazn2025-09-16 12:25
    Iterative overlap for peak merging
  • Issue comment#2025HKzda2102025-09-06 09:07
    Another error with addIterativeLSI - "Error in clusterDF$clusters : $ operator is invalid for atomic vectors"
  • Issue comment#2025HKzda2102025-09-06 09:06
    Another error with addIterativeLSI - "Error in clusterDF$clusters : $ operator is invalid for atomic vectors"
  • Issue comment#2025HKzda2102025-09-06 09:05
    Another error with addIterativeLSI - "Error in clusterDF$clusters : $ operator is invalid for atomic vectors"
  • Pull request#2311WSpaceWang2025-08-31 19:53
  • Issue comment#2186159596013682025-08-08 02:53
    Installation
  • Issue comment#1988Fugwaaaa2025-08-02 06:51
    GroupCoverage file path doesn't update saveArchRProject
  • Issue comment#2132Fugwaaaa2025-08-02 04:01
    Error in subsetArchRProject
  • Issue comment#2132Fugwaaaa2025-08-02 04:00
    Error in subsetArchRProject
  • Issue comment#2250LCGaoZzz2025-07-31 12:59
    `heatmapCodex`: ERROR while rich displaying an object: Error in grid.Call.graphics(C_downvppath, name$path, name$name, strict): Viewport 'Norm. Enrichment -log10(P-adj) [0-Max]_heatmap_body_1_1' was not found
  • Issue comment#2097ackman-github2025-07-22 09:19
    ERROR:Found in .fastTSSCounts for/ERROR:ArrowFiles completed./ERROR:double free or corruption
  • Issue comment#2097HaixJiang2025-07-22 07:24
    ERROR:Found in .fastTSSCounts for/ERROR:ArrowFiles completed./ERROR:double free or corruption
  • Issue comment#2097ackman-github2025-07-22 04:59
    ERROR:Found in .fastTSSCounts for/ERROR:ArrowFiles completed./ERROR:double free or corruption
  • Issue comment#2167nyin012025-07-21 18:27
    Long Computation Time for addClusters with Multiple Samples

Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 28 stars here means stars gained during the window, not the repo's star count.