Predict RNA velocity through deep learning
active 2023-08-21 → 2026-04-13 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 967 days from 2023-08-21 to 2026-04-13. Pushes: 3 total, peak 2 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 17 total, peak 2 in a day. Comments: 20 total, peak 5 in a day. Stars: 20 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| Abclisy | 13 | 1 | 0 | 10 |
| zcaiwei | 5 | 0 | 0 | 3 |
| biopzhang | 5 | 2 | 0 | 2 |
| xiao00su | 3 | 0 | 0 | 2 |
| rrydbirk | 2 | 0 | 0 | 0 |
| MSQ-123 | 1 | 0 | 0 | 0 |
| Jaimelan | 1 | 0 | 0 | 1 |
| datou99 | 1 | 0 | 0 | 0 |
| sup27606 | 1 | 0 | 0 | 1 |
| stemjn | 1 | 0 | 0 | 0 |
| ychniu | 1 | 0 | 0 | 1 |
| Jingle0814 | 1 | 0 | 0 | 0 |
| christophechu | 1 | 0 | 0 | 0 |
| AndreaYCT | 1 | 0 | 0 | 0 |
| HelloWorldLTY | 1 | 0 | 0 | 0 |
| studentK2004 | 1 | 0 | 0 | 0 |
| mabaoweireadingene | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#35studentK20042025-06-23 07:37Discrepancy in Long Trajectory Extraction: Sorting by Displacement Instead of Traverse Length
- Issue comment#29ychniu2025-03-29 21:38pseudo_time() error: MAX_ALLOWED_TERM_CELLS=MAX_ALLOWED_TERM_CELLS
- Issue#34AndreaYCT2024-12-17 07:35preprocess with Seurat
- Issue#31christophechu2024-06-27 11:30Downstream analysis using CellRank?
- Issue comment#27biopzhang2024-03-15 21:21error of cd.pseudo_time()
- Issue comment#22Abclisy2024-03-15 19:59The plot of RNA velocity has no arrows
- Issue comment#30Abclisy2024-03-15 19:55Best Practice for Analyzing Multiple Single-cell Sequencing Samples with CellDancer
- Issue comment#28Abclisy2024-03-15 19:33cellDancer does not use GPU
- Issue comment#25Abclisy2024-03-15 19:15How to select gene list
- Issue#13biopzhang2024-02-16 01:47cd.pseudo_time: IndexError: list index out of range (celldancer 1.1.7, python 3.7.2)
- Issue comment#13biopzhang2024-02-16 01:47cd.pseudo_time: IndexError: list index out of range (celldancer 1.1.7, python 3.7.2)
- Issue#27datou992024-01-15 04:12error of cd.pseudo_time()
- Issue#26HelloWorldLTY2024-01-13 22:09Do we have a function to compute RNA velocity for cell by gene matrix?
- Issue#25mabaoweireadingene2024-01-12 08:35How to select gene list
- Issue#23stemjn2024-01-06 19:23torch version compatibility
- Issue comment#18Jaimelan2024-01-05 08:43Obtaining celldancer.pseudo_time() lineage assignment
- Issue comment#22zcaiwei2024-01-03 01:48The plot of RNA velocity has no arrows
- Issue comment#22zcaiwei2023-12-24 08:59The plot of RNA velocity has no arrows
- Issue comment#22xiao00su2023-12-23 02:27The plot of RNA velocity has no arrows
- Issue#22zcaiwei2023-12-22 07:15The plot of RNA velocity has no arrows
- Issue#21zcaiwei2023-12-22 06:23The velocity1 and velocity2 values in celldancer_df are NaN
- Issue comment#20zcaiwei2023-12-22 06:04KeyError: 'Mu'
- Issue comment#20xiao00su2023-12-22 05:44KeyError: 'Mu'
- Issue#19xiao00su2023-12-20 07:56How to identify the transcritption boost genes and branching genes?
- Issue comment#17Abclisy2023-12-12 20:24webiste and cdplt.scatter_gene problems
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 20 stars here means stars gained during the window, not the repo's star count.